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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS18415 and RR42_RS18420 are separated by 1137 nucleotides
RR42_RS18420 and RR42_RS18425 are separated by 491 nucleotides
RR42_RS18425 and RR42_RS18430 are separated by 677 nucleotides
RR42_RS18430 and RR42_RS18435 overlap by 1 nucleotides
RR42_RS18415: RR42_RS18415 - hypothetical protein, at 3,988,244 to 3,989,464
_RS18415
RR42_RS18420: RR42_RS18420 - hypothetical protein, at 3,990,602 to 3,991,171
_RS18420
RR42_RS18425: RR42_RS18425 - hypothetical protein, at 3,991,663 to 3,991,953
_RS18425
RR42_RS18430: RR42_RS18430 - prevent-host-death protein, at 3,992,631 to 3,992,900
_RS18430
RR42_RS18435: RR42_RS18435 - DNA-binding protein, at 3,992,900 to 3,993,313
_RS18435
Group
Condition
RR42
_RS18415
RR42
_RS18420
RR42
_RS18425
RR42
_RS18430
RR42
_RS18435
temperature
R2A 23C
-0.0
-2.9
-0.7
-0.2
-0.0
carbon source
D-Fructose (C)
+0.0
-0.7
-2.3
-1.0
+0.0
temperature
R2A 23C
-0.1
-3.3
-0.5
-0.1
+0.0
stress
R2A with copper (II) chloride 0.25 mM
+0.2
-1.3
-1.8
-0.5
+0.1
oxygen_nitrate
exometabolites; 10% oxygen; 5 mM nitrate
-0.0
-2.2
-1.0
+0.0
-0.1
stress
R2A with Nickel (II) chloride 0.35 mM
-0.1
-0.4
-1.7
-0.8
-0.1
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
-0.1
+0.2
-2.6
-0.8
+0.1
stress
R2A with D-Cycloserine 0.5 mg/ml
-0.0
-2.4
-0.4
-0.0
-0.2
stress
R2A with Doxycycline hyclate 0.0001 mg/ml
-0.0
-3.2
+0.9
-0.6
-0.0
carbon source
Heptanoic (C)
-0.0
-0.0
-2.3
-0.7
+0.2
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
-0.1
+0.1
-1.7
-1.2
+0.2
stress
R2A with A22 0.01 mg/ml
+0.0
-2.9
+0.7
-0.4
-0.0
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
-0.2
-0.0
+0.7
-3.0
+0.0
oxygen_nitrate
exometabolites; 5% oxygen; 5 mM nitrate
+0.0
-1.7
-0.8
-0.1
+0.2
carbon source
L-Alanine (C)
+0.0
-0.6
-1.9
+0.1
-0.0
carbon source
D-Lactate (C)
+0.1
-0.5
-0.0
-1.7
-0.2
lb
LB
+0.1
+0.1
-2.1
-0.1
-0.2
carbon source
L-Leucine (C)
+0.0
-0.6
-0.4
-1.5
+0.3
carbon source
L-Tryptophan (C)
-0.0
-0.6
-0.6
-1.1
+0.1
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
-0.3
-0.1
+0.8
-2.3
-0.2
carbon source
succinate (C)
+0.1
-0.1
-1.5
-0.7
+0.2
oxygen_nitrate
exometabolites; 10% oxygen; 5 mM nitrate
+0.0
-2.0
+0.1
+0.2
-0.0
carbon source
Protocatechuic Acid (C)
-0.1
+0.0
-1.7
+0.5
+0.1
oxygen_nitrate
exometabolites; 10% oxygen; 5 mM nitrate
+0.1
-1.6
+0.9
-0.2
-0.1
stress
R2A with sodium fluoride 100 mM
+0.1
-0.3
-1.3
+0.6
+0.0
carbon source
Octanoic (C)
-0.1
-0.1
+0.7
-1.4
+0.1
stress
R2A with Vancomycin 0.5 mg/ml
-0.0
-2.0
+0.6
+0.6
+0.4
stress
R2A with Lomefloxacin 0.00075 mM
+0.1
+0.9
-1.4
+0.9
+0.1
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
+0.1
+0.0
+1.2
-0.8
+0.4
stress
R2A with Lomefloxacin 0.001 mM
+0.0
+0.7
+1.2
+0.3
-0.2
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RR42_RS18425
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