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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS18285 and RR42_RS18290 overlap by 4 nucleotides
RR42_RS18290 and RR42_RS18295 are separated by 461 nucleotides
RR42_RS18295 and RR42_RS18300 are separated by 24 nucleotides
RR42_RS18300 and RR42_RS18305 are separated by 68 nucleotides
RR42_RS18285: RR42_RS18285 - ribulose-phosphate 3-epimerase, at 3,961,282 to 3,961,992
_RS18285
RR42_RS18290: RR42_RS18290 - phosphoglycolate phosphatase, at 3,961,989 to 3,962,720
_RS18290
RR42_RS18295: RR42_RS18295 - anthranilate synthase component I, at 3,963,182 to 3,964,699
_RS18295
RR42_RS18300: RR42_RS18300 - anthranilate synthase subunit II, at 3,964,724 to 3,965,293
_RS18300
RR42_RS18305: RR42_RS18305 - anthranilate phosphoribosyltransferase, at 3,965,362 to 3,966,390
_RS18305
Group
Condition
RR42
_RS18285
RR42
_RS18290
RR42
_RS18295
RR42
_RS18300
RR42
_RS18305
carbon source
L-Proline (C)
N.D.
-0.1
-5.2
-6.0
-6.8
carbon source
4-Hydroxybenzoic Acid (C)
N.D.
-0.2
-4.7
-6.4
-6.3
nitrogen source
nitrite (N)
N.D.
-0.3
-5.1
-4.9
-6.9
carbon source
D-Gluconic Acid (C)
N.D.
+0.1
-4.9
-5.7
-6.6
carbon source
L-Malic (C)
N.D.
-0.2
-4.4
-5.7
-6.6
carbon source
succinate (C)
N.D.
-0.0
-4.6
-5.6
-6.5
carbon source
D,L-Lactate (C)
N.D.
-0.2
-4.5
-5.6
-6.2
carbon source
L-Leucine (C)
N.D.
+0.0
-5.0
-5.0
-6.6
nitrogen source
L-Valine (N)
N.D.
-0.0
-4.4
-5.6
-6.5
carbon source
Carbon source Phenylacetic 2.5 mM
N.D.
-0.2
-4.5
-4.0
-7.7
nitrogen source
D-Alanine (N)
N.D.
-0.0
-5.2
-4.3
-6.7
carbon source
propionate (C)
N.D.
+0.2
-4.1
-5.7
-6.6
nitrogen source
L-Serine (N)
N.D.
+0.0
-3.9
-5.7
-6.6
carbon source
D-Lactate (C)
N.D.
-0.1
-4.8
-5.0
-6.3
carbon source
L-Glutamine (C)
N.D.
+0.2
-4.4
-5.3
-6.6
nitrogen source
L-Leucine (N)
N.D.
-0.1
-5.2
-5.4
-5.4
carbon source
a-Ketoglutaric (C)
N.D.
-0.1
-4.5
-5.2
-6.3
carbon source
L-Alanine (C)
N.D.
+0.3
-4.7
-5.0
-6.6
nitrogen source
L-Phenylalanine (N)
N.D.
-0.0
-4.5
-4.8
-6.6
nitrogen source
L-Serine (N)
N.D.
-0.2
-4.0
-4.9
-6.8
carbon source
L-Leucine (C)
N.D.
+0.1
-5.1
-4.4
-6.5
nitrogen source
L-Citrulline (N)
N.D.
-0.1
-4.6
-4.3
-6.9
carbon source
L-Malic (C)
N.D.
-0.2
-4.6
-4.8
-6.2
nitrogen source
L-Lysine (N)
N.D.
+0.0
-4.1
-6.4
-5.3
carbon source
Ethanol (C)
N.D.
+0.1
-4.7
-4.6
-6.5
nitrogen source
D-Alanine (N)
N.D.
-0.1
-4.3
-4.6
-6.6
carbon source
succinate (C)
N.D.
-0.1
-4.0
-5.2
-6.4
carbon source
L-Glutamine (C)
N.D.
-0.1
-4.6
-4.5
-6.4
carbon source
butyrate (C)
N.D.
-0.1
-4.7
-3.9
-6.8
carbon source
Ethanol (C)
N.D.
+0.1
-4.5
-4.4
-6.3
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