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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS18275 and RR42_RS18280 are separated by 25 nucleotides
RR42_RS18280 and RR42_RS18285 are separated by 166 nucleotides
RR42_RS18285 and RR42_RS18290 overlap by 4 nucleotides
RR42_RS18290 and RR42_RS18295 are separated by 461 nucleotides
RR42_RS18275: RR42_RS18275 - murein transglycosylase, at 3,960,488 to 3,960,715
_RS18275
RR42_RS18280: RR42_RS18280 - magnesium transporter ApaG, at 3,960,741 to 3,961,115
_RS18280
RR42_RS18285: RR42_RS18285 - ribulose-phosphate 3-epimerase, at 3,961,282 to 3,961,992
_RS18285
RR42_RS18290: RR42_RS18290 - phosphoglycolate phosphatase, at 3,961,989 to 3,962,720
_RS18290
RR42_RS18295: RR42_RS18295 - anthranilate synthase component I, at 3,963,182 to 3,964,699
_RS18295
Group
Condition
RR42
_RS18275
RR42
_RS18280
RR42
_RS18285
RR42
_RS18290
RR42
_RS18295
nitrogen source
nitrite (N)
N.D.
-0.1
N.D.
-0.3
-5.1
carbon source
L-Histidine (C)
N.D.
-0.4
N.D.
-0.0
-5.0
nitrogen source
L-Leucine (N)
N.D.
-0.1
N.D.
-0.1
-5.2
carbon source
L-Histidine (C)
N.D.
+0.1
N.D.
-0.1
-5.4
carbon source
L-Proline (C)
N.D.
+0.1
N.D.
-0.1
-5.2
carbon source
Carbon source Phenylacetic 2.5 mM
N.D.
-0.5
N.D.
-0.2
-4.5
nitrogen source
L-Glutamine (N)
N.D.
-0.0
N.D.
-0.3
-4.8
nitrogen source
D-Alanine (N)
N.D.
+0.1
N.D.
-0.0
-5.2
carbon source
D-Lactate (C)
N.D.
-0.1
N.D.
-0.0
-5.0
carbon source
L-Leucine (C)
N.D.
-0.1
N.D.
+0.1
-5.1
carbon source
L-Malic (C)
N.D.
-0.1
N.D.
-0.2
-4.6
carbon source
D-Lactate (C)
N.D.
+0.0
N.D.
-0.1
-4.8
carbon source
4-Hydroxybenzoic Acid (C)
N.D.
-0.0
N.D.
-0.2
-4.7
nitrogen source
nitrate (N)
N.D.
+0.1
N.D.
-0.1
-4.8
carbon source
D,L-Lactate (C)
N.D.
-0.1
N.D.
-0.2
-4.5
carbon source
Ethanol (C)
N.D.
-0.2
N.D.
+0.1
-4.7
carbon source
L-Lactate (C)
N.D.
-0.2
N.D.
-0.1
-4.5
carbon source
D-Gluconic Acid (C)
N.D.
-0.0
N.D.
+0.1
-4.9
carbon source
butyrate (C)
N.D.
-0.0
N.D.
-0.1
-4.7
carbon source
L-Asparagine (C)
N.D.
-0.1
N.D.
-0.0
-4.7
carbon source
L-Alanine (C)
N.D.
-0.2
N.D.
+0.3
-4.7
carbon source
L-Leucine (C)
N.D.
+0.4
N.D.
+0.0
-5.0
carbon source
L-Glutamine (C)
N.D.
+0.1
N.D.
-0.1
-4.6
carbon source
L-Threonine (C)
N.D.
-0.2
N.D.
+0.1
-4.5
nitrogen source
L-Leucine (N)
N.D.
+0.1
N.D.
-0.0
-4.6
carbon source
succinate (C)
N.D.
+0.2
N.D.
-0.0
-4.6
nitrogen source
L-Citrulline (N)
N.D.
+0.3
N.D.
-0.1
-4.6
nitrogen source
L-Phenylalanine (N)
N.D.
+0.4
N.D.
-0.0
-4.5
carbon source
Trisodium citrate (C)
N.D.
+0.3
N.D.
-0.1
-4.3
carbon source
L-Glutamine (C)
N.D.
+0.5
N.D.
+0.2
-4.4
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