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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS18240 and RR42_RS18245 are separated by 21 nucleotides
RR42_RS18245 and RR42_RS18250 are separated by 558 nucleotides
RR42_RS18250 and RR42_RS18255 are separated by 246 nucleotides
RR42_RS18255 and RR42_RS18260 are separated by 59 nucleotides
RR42_RS18240: RR42_RS18240 - tRNA-Ile, at 3,953,277 to 3,953,353
_RS18240
RR42_RS18245: RR42_RS18245 - 16S ribosomal RNA, at 3,953,375 to 3,954,949
_RS18245
RR42_RS18250: RR42_RS18250 - enoyl-CoA hydratase, at 3,955,508 to 3,956,284
_RS18250
RR42_RS18255: RR42_RS18255 - enoyl-CoA hydratase, at 3,956,531 to 3,957,301
_RS18255
RR42_RS18260: RR42_RS18260 - phenylacetic acid degradation protein, at 3,957,361 to 3,957,807
_RS18260
Group
Condition
RR42
_RS18240
RR42
_RS18245
RR42
_RS18250
RR42
_RS18255
RR42
_RS18260
carbon source
Carbon source Phenylacetic 2.5 mM
N.D.
N.D.
-1.5
-0.5
+0.1
carbon source
Carbon source Phenylacetic 2.5 mM
N.D.
N.D.
-1.7
-0.4
+0.3
stress
R2A with D-Cycloserine 0.5 mg/ml
N.D.
N.D.
-0.3
-0.6
+0.1
stress
R2A with Bacitracin 0.5 mg/ml
N.D.
N.D.
-0.2
-0.4
-0.1
carbon source
butyrate (C)
N.D.
N.D.
-0.2
-0.6
+0.0
carbon source
Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
N.D.
N.D.
-0.3
-0.2
-0.1
carbon source
Valeric (C)
N.D.
N.D.
-0.2
-0.1
-0.3
nitrogen source
casaminos (N)
N.D.
N.D.
-0.1
-0.2
-0.3
stress
R2A with Nickel (II) chloride 0.25 mM
N.D.
N.D.
+0.0
-0.6
-0.0
stress
R2A with Zinc 0.1 mM
N.D.
N.D.
-0.1
-0.5
+0.0
stress
R2A with Chloride 300 mM
N.D.
N.D.
+0.1
-0.6
+0.0
stress
R2A with Nickel (II) chloride 0.35 mM
N.D.
N.D.
+0.1
-0.3
-0.3
stress
R2A with Nickel (II) chloride 0.35 mM
N.D.
N.D.
-0.2
-0.4
+0.2
stress
R2A with Cobalt chloride 0.3 mM
N.D.
N.D.
+0.2
-0.5
+0.0
carbon source
Protocatechuic Acid (C)
N.D.
N.D.
+0.4
-0.4
-0.3
carbon source
Pimelic (C)
N.D.
N.D.
+0.2
+0.1
-0.4
r2a
R2A
N.D.
N.D.
+0.2
-0.5
+0.2
carbon source
Azelaic (C)
N.D.
N.D.
+0.1
+0.2
-0.3
stress
R2A with Chlorite 4 mM
N.D.
N.D.
+0.2
-0.3
+0.2
carbon source
Octanoic (C)
N.D.
N.D.
+0.3
+0.1
-0.2
nitrogen source
L-Glutamine (N)
N.D.
N.D.
-0.2
+0.4
+0.0
carbon source
Dodecandioic (C)
N.D.
N.D.
+0.2
+0.3
-0.3
stress
R2A with Vancomycin 0.5 mg/ml
N.D.
N.D.
+0.1
-0.2
+0.3
carbon source
succinate (C)
N.D.
N.D.
+0.1
+0.4
-0.2
stress
R2A with Lomefloxacin 0.001 mM
N.D.
N.D.
+0.0
+0.4
-0.2
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
N.D.
N.D.
+0.0
+0.6
-0.1
carbon source
pyruvate (C)
N.D.
N.D.
-0.1
+0.4
+0.2
stress
R2A with Cobalt chloride 0.5 mM
N.D.
N.D.
-0.1
+0.4
+0.2
carbon source
Trisodium citrate (C)
N.D.
N.D.
+0.0
+0.3
+0.3
carbon source
4-Hydroxybenzoic Acid (C)
N.D.
N.D.
+0.2
+0.5
+0.2
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