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Gene
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Nearby
Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS18210 and RR42_RS18215 are separated by 311 nucleotides
RR42_RS18215 and RR42_RS18220 are separated by 7 nucleotides
RR42_RS18220 and RR42_RS18225 are separated by 332 nucleotides
RR42_RS18225 and RR42_RS18230 are separated by 113 nucleotides
RR42_RS18210: RR42_RS18210 - ABC transporter substrate-binding protein, at 3,945,342 to 3,946,928
_RS18210
RR42_RS18215: RR42_RS18215 - amidohydrolase, at 3,947,240 to 3,948,433
_RS18215
RR42_RS18220: RR42_RS18220 - hypothetical protein, at 3,948,441 to 3,949,397
_RS18220
RR42_RS18225: RR42_RS18225 - 5S ribosomal RNA, at 3,949,730 to 3,949,842
_RS18225
RR42_RS18230: RR42_RS18230 - 23S ribosomal RNA, at 3,949,956 to 3,952,857
_RS18230
Group
Condition
RR42
_RS18210
RR42
_RS18215
RR42
_RS18220
RR42
_RS18225
RR42
_RS18230
stress
R2A with Dimethyl Sulfoxide 5 vol%
-0.4
-0.4
-0.3
N.D.
N.D.
lb
LB
-0.4
-0.5
-0.0
N.D.
N.D.
carbon source
adipate (C)
-0.1
-0.5
-0.3
N.D.
N.D.
temperature
R2A 23C
-0.4
-0.3
-0.0
N.D.
N.D.
nitrogen source
L-Lysine (N)
-0.1
-0.3
-0.2
N.D.
N.D.
carbon source
Hexanoic (C)
-0.1
-0.7
+0.1
N.D.
N.D.
carbon source
Carbon source Phenylacetic 2.5 mM
-0.1
-0.6
+0.0
N.D.
N.D.
nitrogen source
L-Serine (N)
-0.1
-0.3
-0.3
N.D.
N.D.
oxygen_nitrate
exometabolites; 10% oxygen; 5 mM nitrate
+0.2
-0.7
-0.1
N.D.
N.D.
stress
R2A with Zinc 0.1 mM
+0.1
-0.7
+0.0
N.D.
N.D.
stress
R2A with A22 0.01 mg/ml
+0.1
-0.5
-0.0
N.D.
N.D.
stress
R2A with Sisomicin 0.035 mg/ml
-0.2
+0.2
-0.3
N.D.
N.D.
stress
R2A with Nickel (II) chloride 0.35 mM
+0.3
-0.1
-0.5
N.D.
N.D.
carbon source
L-Proline (C)
-0.2
+0.2
-0.3
N.D.
N.D.
stress
R2A with Cobalt chloride 0.5 mM
-0.0
+0.3
-0.5
N.D.
N.D.
carbon source
4-Hydroxybenzoic Acid (C)
+0.2
-0.4
-0.0
N.D.
N.D.
carbon source
Azelaic (C)
+0.2
-0.5
+0.1
N.D.
N.D.
carbon source
Suberic (C)
+0.1
-0.6
+0.3
N.D.
N.D.
stress
R2A with Cobalt chloride 0.3 mM
-0.4
+0.5
-0.1
N.D.
N.D.
carbon source
L-Asparagine (C)
-0.1
+0.4
-0.2
N.D.
N.D.
carbon source
L-Lactate (C)
+0.3
-0.3
+0.1
N.D.
N.D.
carbon source
propionate (C)
+0.3
+0.0
-0.3
N.D.
N.D.
nitrogen source
D-Alanine (N)
+0.3
+0.2
-0.3
N.D.
N.D.
stress
R2A with Cisplatin 0.001 mg/ml
+0.4
+0.2
-0.1
N.D.
N.D.
carbon source
Heptanoic (C)
+0.1
+0.3
+0.2
N.D.
N.D.
carbon source
Trisodium citrate (C)
+0.0
+0.4
+0.1
N.D.
N.D.
stress
R2A with Doxycycline hyclate 0.0001 mg/ml
+0.2
+0.3
+0.1
N.D.
N.D.
stress
R2A with Chlorite 4 mM
+0.3
+0.4
-0.0
N.D.
N.D.
stress
R2A with copper (II) chloride 0.25 mM
+0.2
+0.4
+0.1
N.D.
N.D.
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
+0.2
+0.2
+0.4
N.D.
N.D.
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