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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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5
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS18155 and RR42_RS18160 are separated by 220 nucleotides
RR42_RS18160 and RR42_RS18165 are separated by 51 nucleotides
RR42_RS18165 and RR42_RS18170 are separated by 89 nucleotides
RR42_RS18170 and RR42_RS18175 are separated by 8 nucleotides
RR42_RS18155: RR42_RS18155 - TetR family transcriptional regulator, at 3,928,896 to 3,929,561
_RS18155
RR42_RS18160: RR42_RS18160 - acyl-CoA synthetase, at 3,929,782 to 3,931,512
_RS18160
RR42_RS18165: RR42_RS18165 - carbamoyl-phosphate synthase large subunit, at 3,931,564 to 3,934,902
_RS18165
RR42_RS18170: RR42_RS18170 - amino acid ABC transporter substrate-binding protein, at 3,934,992 to 3,936,266
_RS18170
RR42_RS18175: RR42_RS18175 - aminopeptidase, at 3,936,275 to 3,937,468
_RS18175
Group
Condition
RR42
_RS18155
RR42
_RS18160
RR42
_RS18165
RR42
_RS18170
RR42
_RS18175
stress
R2A with Zinc 0.1 mM
-0.4
-0.2
-0.4
-0.2
-0.2
nitrogen source
L-Serine (N)
-0.1
-0.1
-0.3
-0.2
-0.3
r2a
R2A
-0.2
-0.3
-0.0
-0.2
-0.3
stress
R2A with Paraquat dichloride 0.064 mg/ml
-0.3
-0.0
-0.5
+0.0
-0.3
stress
R2A with Cobalt chloride 0.5 mM
-0.3
-0.3
-0.0
-0.3
-0.1
carbon source
Protocatechuic Acid (C)
-0.0
-0.3
-0.3
-0.2
-0.2
stress
R2A with Dimethyl Sulfoxide 5 vol%
-0.1
-0.1
-0.2
-0.2
-0.2
temperature
R2A 23C
-0.1
-0.3
-0.1
-0.0
-0.2
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
-0.1
-0.1
-0.1
-0.6
+0.0
carbon source
4-Hydroxybenzoic Acid (C)
-0.3
-0.2
+0.1
-0.1
-0.0
carbon source
Suberic (C)
-0.4
-0.2
-0.2
+0.2
+0.1
stress
R2A with Vancomycin 0.5 mg/ml
-0.1
-0.3
-0.3
+0.0
+0.2
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
-0.3
-0.4
+0.3
+0.0
-0.2
stress
R2A with Doxycycline hyclate 0.0001 mg/ml
-0.1
-0.3
-0.3
+0.2
+0.1
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
+0.0
-0.1
-0.0
-0.5
+0.2
carbon source
L-Threonine (C)
-0.2
+0.1
-0.2
+0.2
-0.1
carbon source
Disodium Glutarate (C)
+0.3
-0.3
-0.3
-0.1
+0.0
nitrogen source
L-Glutamine (N)
-0.2
+0.1
+0.3
-0.5
+0.0
stress
R2A with Cobalt chloride 0.3 mM
-0.3
-0.1
+0.3
-0.1
+0.0
carbon source
Carbon source Phenylacetic 2.5 mM
+0.2
-0.3
-0.2
+0.1
+0.1
carbon source
Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
-0.2
-0.2
+0.3
+0.1
+0.0
carbon source
Azelaic (C)
-0.2
+0.2
-0.1
+0.3
+0.0
stress
R2A with Nickel (II) chloride 0.5 mM
-0.2
+0.0
+0.2
-0.1
+0.2
carbon source
Octanoic (C)
-0.3
+0.1
+0.2
+0.2
+0.0
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
+0.0
-0.3
+0.4
+0.1
+0.0
carbon source
adipate (C)
+0.2
+0.1
-0.2
+0.2
+0.1
lb
LB
-0.0
+0.1
+0.5
-0.2
+0.0
stress
R2A with Polymyxin B sulfate 0.005 mg/ml
+0.3
+0.2
+0.1
-0.1
-0.1
stress
R2A with nitrate 200 mM
-0.0
+0.1
+0.3
+0.3
+0.1
nitrogen source
L-Leucine (N)
-0.0
+0.2
+0.6
+0.1
+0.1
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