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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS17930 and RR42_RS17935 overlap by 8 nucleotides
RR42_RS17935 and RR42_RS17940 are separated by 79 nucleotides
RR42_RS17940 and RR42_RS17945 are separated by 39 nucleotides
RR42_RS17945 and RR42_RS17950 are separated by 149 nucleotides
RR42_RS17930: RR42_RS17930 - RNA pyrophosphohydrolase, at 3,880,375 to 3,881,037
_RS17930
RR42_RS17935: RR42_RS17935 - lipoprotein, at 3,881,030 to 3,881,659
_RS17935
RR42_RS17940: RR42_RS17940 - gamma-glutamyl kinase, at 3,881,739 to 3,882,857
_RS17940
RR42_RS17945: RR42_RS17945 - GTPase CgtA, at 3,882,897 to 3,883,997
_RS17945
RR42_RS17950: RR42_RS17950 - 50S ribosomal protein L27, at 3,884,147 to 3,884,407
_RS17950
Group
Condition
RR42
_RS17930
RR42
_RS17935
RR42
_RS17940
RR42
_RS17945
RR42
_RS17950
carbon source
Pimelic (C)
-3.4
-0.1
-0.3
N.D.
N.D.
carbon source
Pimelic (C)
-2.3
-0.4
-0.4
N.D.
N.D.
carbon source
Disodium Glutarate (C)
-2.1
-0.0
-0.7
N.D.
N.D.
carbon source
Suberic (C)
-2.4
-0.1
-0.0
N.D.
N.D.
carbon source
Azelaic (C)
-1.8
-0.0
-0.7
N.D.
N.D.
carbon source
adipate (C)
-2.2
-0.2
-0.0
N.D.
N.D.
carbon source
Suberic (C)
-2.3
-0.1
+0.1
N.D.
N.D.
carbon source
Azelaic (C)
-1.6
-0.2
-0.3
N.D.
N.D.
nitrogen source
L-Leucine (N)
-1.2
+0.0
-0.7
N.D.
N.D.
carbon source
a-Ketoglutaric (C)
-1.5
+0.1
-0.4
N.D.
N.D.
carbon source
pyruvate (C)
-1.0
-0.0
-0.8
N.D.
N.D.
carbon source
adipate (C)
-2.0
-0.3
+0.5
N.D.
N.D.
nitrogen source
casaminos (N)
-0.9
+0.0
-0.8
N.D.
N.D.
carbon source
Octanoic (C)
-1.4
+0.1
-0.2
N.D.
N.D.
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
+0.9
-0.0
-2.4
N.D.
N.D.
stress
R2A with Vancomycin 0.5 mg/ml
-1.0
-0.7
+0.2
N.D.
N.D.
stress
R2A with Lomefloxacin 0.001 mM
+1.7
-0.2
-0.7
N.D.
N.D.
lb
LB
+0.9
+0.4
-0.5
N.D.
N.D.
carbon source
Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
+1.7
+0.2
-0.6
N.D.
N.D.
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
+1.6
+0.2
-0.3
N.D.
N.D.
carbon source
Protocatechuic Acid (C)
+3.1
+0.4
-1.3
N.D.
N.D.
carbon source
Protocatechuic Acid (C)
+2.4
+0.4
-0.6
N.D.
N.D.
stress
R2A with Nickel (II) chloride 0.35 mM
+1.3
+0.3
+0.5
N.D.
N.D.
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
+2.8
+0.3
-0.6
N.D.
N.D.
stress
R2A with Cobalt chloride 0.3 mM
+1.6
+0.3
+0.6
N.D.
N.D.
stress
R2A with D-Cycloserine 0.5 mg/ml
+1.9
+0.3
+0.4
N.D.
N.D.
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
+2.5
+0.3
+0.1
N.D.
N.D.
stress
R2A with Cobalt chloride 0.5 mM
+3.1
+0.6
-0.1
N.D.
N.D.
stress
R2A with Nickel (II) chloride 0.5 mM
+4.7
+1.0
+0.1
N.D.
N.D.
stress
R2A with Nickel (II) chloride 0.35 mM
+5.3
+0.6
+1.4
N.D.
N.D.
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