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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS17875 and RR42_RS17880 overlap by 4 nucleotides
RR42_RS17880 and RR42_RS17885 are separated by 7 nucleotides
RR42_RS17885 and RR42_RS17890 are separated by 103 nucleotides
RR42_RS17890 and RR42_RS17895 are separated by 79 nucleotides
RR42_RS17875: RR42_RS17875 - histidine kinase, at 3,868,970 to 3,871,063
_RS17875
RR42_RS17880: RR42_RS17880 - hypothetical protein, at 3,871,060 to 3,871,341
_RS17880
RR42_RS17885: RR42_RS17885 - ABC transporter permease, at 3,871,349 to 3,872,281
_RS17885
RR42_RS17890: RR42_RS17890 - signal recognition particle protein, at 3,872,385 to 3,873,779
_RS17890
RR42_RS17895: RR42_RS17895 - hypoxanthine phosphoribosyltransferase, at 3,873,859 to 3,874,401
_RS17895
Group
Condition
RR42
_RS17875
RR42
_RS17880
RR42
_RS17885
RR42
_RS17890
RR42
_RS17895
stress
R2A with Nickel (II) chloride 0.5 mM
+0.5
-0.2
-4.2
N.D.
-0.2
carbon source
Pimelic (C)
-0.2
-1.2
-2.2
N.D.
+0.1
stress
R2A with Nickel (II) chloride 0.25 mM
-0.5
+0.4
-2.9
N.D.
-0.3
stress
R2A with Cobalt chloride 0.3 mM
-0.3
+0.7
-4.0
N.D.
+0.3
stress
R2A with nitrate 150 mM
-0.4
+0.7
-3.4
N.D.
+0.0
carbon source
Pimelic (C)
-0.3
-0.3
-2.4
N.D.
+0.0
carbon source
Octanoic (C)
-0.6
-1.7
-0.9
N.D.
+0.1
stress
R2A with Cisplatin 0.001 mg/ml
+0.3
-1.0
-1.8
N.D.
-0.3
carbon source
Disodium Glutarate (C)
-1.1
-1.4
-0.3
N.D.
+0.0
lb
LB
+0.0
-4.5
+0.6
N.D.
+1.0
nitrogen source
L-Asparagine (N)
+0.1
-1.8
-0.6
N.D.
-0.4
carbon source
propionate (C)
-0.4
-1.3
-0.7
N.D.
-0.3
stress
R2A with Nickel (II) chloride 0.35 mM
-0.3
-0.6
-1.9
N.D.
+0.0
nitrogen source
L-Valine (N)
-0.2
-1.3
-0.6
N.D.
-0.6
carbon source
succinate (C)
-0.4
-1.5
-0.6
N.D.
-0.0
stress
R2A with Nickel (II) chloride 0.25 mM
-0.4
+0.8
-2.9
N.D.
+0.0
carbon source
Suberic (C)
-0.6
-1.1
-0.6
N.D.
-0.0
stress
R2A with Chloride 300 mM
+0.3
-1.2
-1.4
N.D.
-0.1
stress
R2A with Cobalt chloride 0.5 mM
+0.5
+0.7
-4.0
N.D.
+0.6
stress
R2A with Polymyxin B sulfate 0.005 mg/ml
-0.2
+0.2
-2.1
N.D.
-0.1
stress
R2A with Nickel (II) chloride 0.35 mM
+0.1
+1.1
-2.5
N.D.
-0.1
stress
R2A with Chlorite 4 mM
-0.7
+0.4
-1.3
N.D.
+0.2
stress
R2A with Paraquat dichloride 0.064 mg/ml
+0.6
-1.3
-0.7
N.D.
+0.2
carbon source
Protocatechuic Acid (C)
-0.5
-1.2
+0.4
N.D.
+0.3
carbon source
Protocatechuic Acid (C)
+0.1
-1.4
+0.7
N.D.
-0.2
stress
R2A with D-Cycloserine 0.01 mg/ml
-0.0
+1.1
-1.3
N.D.
+0.3
nitrogen source
nitrite (N)
+0.5
-1.6
+1.1
N.D.
+0.2
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
-0.1
+0.4
+1.7
N.D.
+0.1
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
-0.0
+1.3
+1.1
N.D.
+0.3
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
+0.1
+0.5
+2.2
N.D.
+0.1
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