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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS17785 and RR42_RS17790 are separated by 144 nucleotides
RR42_RS17790 and RR42_RS17795 are separated by 132 nucleotides
RR42_RS17795 and RR42_RS17800 are separated by 26 nucleotides
RR42_RS17800 and RR42_RS17805 are separated by 23 nucleotides
RR42_RS17785: RR42_RS17785 - 4-oxalocrotonate tautomerase, at 3,847,549 to 3,847,941
_RS17785
RR42_RS17790: RR42_RS17790 - transporter, at 3,848,086 to 3,849,477
_RS17790
RR42_RS17795: RR42_RS17795 - aldo/keto reductase, at 3,849,610 to 3,850,443
_RS17795
RR42_RS17800: RR42_RS17800 - mercuric reductase, at 3,850,470 to 3,851,879
_RS17800
RR42_RS17805: RR42_RS17805 - hypothetical protein, at 3,851,903 to 3,852,130
_RS17805
Group
Condition
RR42
_RS17785
RR42
_RS17790
RR42
_RS17795
RR42
_RS17800
RR42
_RS17805
lb
LB
-0.5
+0.4
+0.1
+0.8
-4.8
stress
R2A with Paraquat dichloride 0.064 mg/ml
-0.2
+0.3
-0.3
-0.0
-2.4
nitrogen source
L-Citrulline (N)
+0.1
+0.1
+0.1
+0.2
-1.9
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
+0.6
+0.2
+0.0
+0.2
-1.8
carbon source
Hexanoic (C)
+0.2
+0.2
-0.0
+0.1
-1.1
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
+0.1
-0.0
+0.2
+0.7
-1.4
stress
R2A with D-Cycloserine 0.01 mg/ml
+0.2
+0.1
+0.2
+0.3
-0.8
nitrogen source
casaminos (N)
-0.1
-0.1
-0.2
-0.2
+1.0
nitrogen source
Glycine (N)
-0.1
-0.1
-0.0
-0.3
+1.1
carbon source
L-Asparagine (C)
+0.0
-0.2
-0.2
+0.2
+1.3
carbon source
D-Lactate (C)
+0.0
+0.1
-0.3
+0.1
+1.3
nitrogen source
L-Glutamine (N)
+0.1
+0.3
+0.1
-0.3
+0.9
carbon source
L-Glutamine (C)
-0.1
+0.2
-0.2
+0.4
+1.0
nitrogen source
L-Tryptophan (N)
+0.1
+0.1
-0.1
+0.0
+1.2
carbon source
adipate (C)
-0.1
+0.2
+0.1
+0.3
+0.9
carbon source
L-Tryptophan (C)
+0.1
+0.2
-0.1
+0.1
+1.1
carbon source
Octanoic (C)
+0.3
+0.3
+0.3
+0.2
+0.6
carbon source
D-Gluconic Acid (C)
-0.0
+0.1
+0.2
-0.0
+1.6
oxygen_nitrate
exometabolites; 5% oxygen; 5 mM nitrate
+0.2
-0.2
+0.2
+0.3
+1.2
nitrogen source
L-Leucine (N)
+0.3
+0.1
-0.2
+0.4
+1.2
carbon source
D-Lactate (C)
+0.1
-0.1
+0.1
+0.2
+1.6
carbon source
Hexanoic (C)
+0.2
+0.2
+0.1
+0.2
+1.1
carbon source
L-Asparagine (C)
+0.2
+0.0
+0.2
+0.1
+1.3
carbon source
Pimelic (C)
-0.0
+0.0
+0.1
+0.4
+1.5
carbon source
propionate (C)
+0.1
+0.3
-0.0
+0.1
+1.5
carbon source
Octanoic (C)
+0.2
+0.3
+0.2
+0.3
+1.2
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
+0.3
+0.4
-0.0
+0.1
+1.7
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
+0.0
+0.1
+0.3
+0.2
+1.9
stress
R2A with D-Cycloserine 0.5 mg/ml
+0.2
+0.2
-0.0
+0.2
+2.1
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
-0.0
+0.3
+0.2
+0.3
+2.0
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