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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS17775 and RR42_RS17780 are separated by 27 nucleotides
RR42_RS17780 and RR42_RS17785 are separated by 151 nucleotides
RR42_RS17785 and RR42_RS17790 are separated by 144 nucleotides
RR42_RS17790 and RR42_RS17795 are separated by 132 nucleotides
RR42_RS17775: RR42_RS17775 - Fe(II)-dependent oxygenase, at 3,845,793 to 3,846,479
_RS17775
RR42_RS17780: RR42_RS17780 - LysR family transcriptional regulator, at 3,846,507 to 3,847,397
_RS17780
RR42_RS17785: RR42_RS17785 - 4-oxalocrotonate tautomerase, at 3,847,549 to 3,847,941
_RS17785
RR42_RS17790: RR42_RS17790 - transporter, at 3,848,086 to 3,849,477
_RS17790
RR42_RS17795: RR42_RS17795 - aldo/keto reductase, at 3,849,610 to 3,850,443
_RS17795
Group
Condition
RR42
_RS17775
RR42
_RS17780
RR42
_RS17785
RR42
_RS17790
RR42
_RS17795
stress
R2A with Cobalt chloride 0.5 mM
-0.8
-0.2
-0.2
-0.3
-0.1
lb
LB
-1.8
+0.4
-0.5
+0.4
+0.1
carbon source
propionate (C)
-0.3
-0.4
-0.0
-0.3
-0.3
carbon source
L-Proline (C)
-0.5
-0.5
+0.1
-0.2
+0.0
stress
R2A with Thallium(I) acetate 0.001 mg/ml
-0.3
+0.2
-0.2
-0.1
-0.2
stress
R2A with Paraquat dichloride 0.064 mg/ml
-0.2
+0.2
-0.2
+0.3
-0.3
carbon source
Disodium Glutarate (C)
+0.2
-0.3
-0.1
-0.2
+0.3
stress
R2A with nitrate 200 mM
+0.4
-0.2
+0.1
-0.4
+0.1
nitrogen source
L-Valine (N)
-0.2
+0.5
+0.0
+0.1
-0.4
carbon source
Heptanoic (C)
-0.1
-0.3
+0.2
+0.5
-0.2
stress
R2A with copper (II) chloride 0.25 mM
+0.5
+0.2
+0.1
-0.2
-0.5
stress
R2A with A22 0.01 mg/ml
+0.5
+0.4
-0.2
-0.2
-0.0
stress
R2A with Cisplatin 0.001 mg/ml
+0.6
+0.1
-0.3
+0.0
+0.1
stress
R2A with D-Cycloserine 0.01 mg/ml
+0.4
-0.3
+0.2
+0.1
+0.2
carbon source
Azelaic (C)
+0.5
-0.2
+0.1
+0.1
+0.2
carbon source
Hexanoic (C)
-0.1
+0.4
+0.2
+0.2
-0.0
stress
R2A with Zinc 0.1 mM
+0.5
+0.5
-0.1
+0.1
-0.2
carbon source
L-Threonine (C)
+0.4
+0.4
+0.1
-0.2
+0.1
nitrogen source
L-Leucine (N)
+0.2
+0.3
+0.3
+0.1
-0.2
carbon source
Octanoic (C)
-0.2
+0.1
+0.3
+0.3
+0.3
carbon source
Carbon source Phenylacetic 2.5 mM
+0.6
-0.0
+0.3
-0.1
+0.2
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
+0.5
-0.2
+0.6
+0.2
+0.0
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
+0.4
+0.3
+0.0
+0.1
+0.3
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
+0.4
+0.2
+0.3
+0.4
-0.0
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
+0.3
+0.8
+0.3
-0.1
+0.0
stress
R2A with D-Cycloserine 0.5 mg/ml
+0.5
+0.4
+0.2
+0.2
-0.0
carbon source
Octanoic (C)
+0.2
+0.3
+0.2
+0.3
+0.2
carbon source
Azelaic (C)
+0.5
+0.1
+0.2
+0.2
+0.3
carbon source
Hexanoic (C)
+0.5
+0.2
+0.2
+0.2
+0.1
carbon source
Protocatechuic Acid (C)
+0.7
+0.2
+0.3
+0.4
-0.1
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RR42_RS17785
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