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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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5
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS17725 and RR42_RS17730 are separated by 507 nucleotides
RR42_RS17730 and RR42_RS17735 are separated by 478 nucleotides
RR42_RS17735 and RR42_RS17740 are separated by 168 nucleotides
RR42_RS17740 and RR42_RS17745 are separated by 228 nucleotides
RR42_RS17725: RR42_RS17725 - membrane protein, at 3,834,329 to 3,834,796
_RS17725
RR42_RS17730: RR42_RS17730 - hypothetical protein, at 3,835,304 to 3,835,885
_RS17730
RR42_RS17735: RR42_RS17735 - hypothetical protein, at 3,836,364 to 3,837,023
_RS17735
RR42_RS17740: RR42_RS17740 - hypothetical protein, at 3,837,192 to 3,837,398
_RS17740
RR42_RS17745: RR42_RS17745 - hypothetical protein, at 3,837,627 to 3,838,109
_RS17745
Group
Condition
RR42
_RS17725
RR42
_RS17730
RR42
_RS17735
RR42
_RS17740
RR42
_RS17745
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
-0.2
-5.0
-3.1
+0.1
+0.2
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
-0.2
-4.0
-1.6
+0.5
-0.1
carbon source
Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
-0.8
-1.0
-3.8
+0.5
+0.1
carbon source
Dodecandioic (C)
+0.1
-2.7
-0.1
-0.2
-0.8
stress
R2A with Cisplatin 0.001 mg/ml
-0.2
-1.6
-2.0
+0.3
+0.0
carbon source
Valeric (C)
+0.1
-1.3
-0.5
-0.9
-0.3
nitrogen source
L-Citrulline (N)
+0.1
-0.9
-1.1
-0.7
-0.2
carbon source
Hexanoic (C)
+0.2
-2.5
-0.1
-0.5
+0.0
stress
R2A with Doxycycline hyclate 0.0001 mg/ml
-0.4
-1.0
-1.3
-0.4
+0.4
carbon source
Heptanoic (C)
+0.1
-1.5
-0.1
-0.8
-0.4
stress
R2A with Vancomycin 0.5 mg/ml
-0.9
-0.7
-0.9
+0.0
+0.2
stress
R2A with Lomefloxacin 0.001 mM
+0.1
-0.8
-1.8
-0.5
+0.6
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
+0.1
-2.8
-0.5
+0.3
+0.6
stress
R2A with copper (II) chloride 0.25 mM
-0.4
-1.1
-1.6
+0.4
+0.5
carbon source
Pimelic (C)
+0.4
-1.7
-0.1
-0.4
-0.3
stress
R2A with Vancomycin 0.5 mg/ml
-1.1
-0.2
-0.8
+0.3
-0.2
carbon source
L-Asparagine (C)
-0.1
-0.4
-1.2
-0.4
+0.4
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
+0.3
-1.3
-1.6
+0.5
+0.5
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
-0.3
-0.5
-1.6
+0.7
+0.1
stress
R2A with nitrate 150 mM
+0.1
-1.8
-0.2
+0.1
+0.4
stress
R2A with Bacitracin 0.5 mg/ml
-0.4
-0.9
-0.7
+0.5
+0.3
stress
R2A with Chlorite 4 mM
+0.4
-0.9
-0.9
+0.1
+0.3
carbon source
Carbon source Phenylacetic 2.5 mM
+0.2
-1.2
-0.5
+0.4
+0.3
carbon source
adipate (C)
+0.2
+0.0
+1.1
-1.5
-0.4
carbon source
adipate (C)
+0.3
+0.5
+0.6
-0.8
-0.4
stress
R2A with Nickel (II) chloride 0.35 mM
+0.2
+1.3
+1.3
-0.2
+0.4
stress
R2A with Polymyxin B sulfate 0.005 mg/ml
-0.6
+1.9
+1.8
+0.3
-0.3
stress
R2A with Cobalt chloride 0.5 mM
+0.1
+2.3
+1.0
+0.0
+0.3
stress
R2A with Nickel (II) chloride 0.5 mM
-0.5
+4.6
+3.0
-0.2
-0.3
stress
R2A with Nickel (II) chloride 0.35 mM
-0.4
+4.0
+3.4
-0.1
+0.2
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RR42_RS17735
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RR42_RS17740
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RR42_RS17745
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