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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS17620 and RR42_RS17625 are separated by 38 nucleotides
RR42_RS17625 and RR42_RS17630 are separated by 47 nucleotides
RR42_RS17630 and RR42_RS17635 are separated by 783 nucleotides
RR42_RS17635 and RR42_RS17640 are separated by 23 nucleotides
RR42_RS17620: RR42_RS17620 - phosphatidylglycerophosphatase, at 3,813,387 to 3,813,953
_RS17620
RR42_RS17625: RR42_RS17625 - damage-inducible protein CinA, at 3,813,992 to 3,814,489
_RS17625
RR42_RS17630: RR42_RS17630 - orotidine 5'-phosphate decarboxylase, at 3,814,537 to 3,815,355
_RS17630
RR42_RS17635: RR42_RS17635 - magnesium transporter CorA, at 3,816,139 to 3,817,101
_RS17635
RR42_RS17640: RR42_RS17640 - peptidoglycan transglycosylase, at 3,817,125 to 3,817,826
_RS17640
Group
Condition
RR42
_RS17620
RR42
_RS17625
RR42
_RS17630
RR42
_RS17635
RR42
_RS17640
stress
R2A with Cisplatin 0.001 mg/ml
-1.3
-1.0
N.D.
-1.9
-0.1
stress
R2A with Cisplatin 0.001 mg/ml
-1.4
-0.5
N.D.
-1.3
-0.1
carbon source
Octanoic (C)
-3.1
+0.1
N.D.
-0.0
-0.1
carbon source
Octanoic (C)
-3.4
+0.5
N.D.
-0.1
-0.0
carbon source
adipate (C)
-3.4
+0.0
N.D.
+0.5
+0.0
carbon source
Pimelic (C)
-3.3
+0.3
N.D.
+0.4
+0.1
temperature
R2A 23C
-1.3
+0.3
N.D.
-1.4
+0.1
carbon source
Pimelic (C)
-3.0
+0.4
N.D.
+0.5
-0.1
carbon source
Suberic (C)
-2.2
+0.4
N.D.
-0.4
+0.1
stress
R2A with Nickel (II) chloride 0.25 mM
-2.5
+0.5
N.D.
+0.3
-0.0
carbon source
adipate (C)
-2.4
+0.6
N.D.
+0.3
+0.0
carbon source
Disodium Glutarate (C)
-2.5
+0.1
N.D.
+1.0
-0.0
stress
R2A with Vancomycin 0.5 mg/ml
-2.0
+0.2
N.D.
+0.8
+0.2
carbon source
Azelaic (C)
-2.1
+0.5
N.D.
+0.7
+0.2
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
+2.5
-0.8
N.D.
-2.4
+0.1
carbon source
Disodium Glutarate (C)
-2.0
+0.1
N.D.
+1.1
+0.1
stress
R2A with Cobalt chloride 0.3 mM
-2.3
+0.4
N.D.
+1.8
-0.2
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
+2.8
-0.5
N.D.
-2.2
+0.1
stress
R2A with Nickel (II) chloride 0.35 mM
-1.6
-0.0
N.D.
+1.9
+0.1
carbon source
Carbon source Phenylacetic 2.5 mM
+2.0
-0.3
N.D.
-1.1
+0.1
stress
R2A with Sisomicin 0.035 mg/ml
-1.6
+0.2
N.D.
+2.8
-0.1
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
+3.4
-0.3
N.D.
-1.6
-0.1
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
+2.8
-0.2
N.D.
-1.0
-0.1
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
+2.7
-0.1
N.D.
-0.7
-0.0
stress
R2A with Doxycycline hyclate 0.0001 mg/ml
+2.2
+0.2
N.D.
+0.5
+0.2
stress
R2A with Lomefloxacin 0.00075 mM
+2.4
+0.0
N.D.
+1.6
+0.1
stress
R2A with Cobalt chloride 0.5 mM
-2.2
+0.6
N.D.
+6.1
-0.1
stress
R2A with Nickel (II) chloride 0.5 mM
-0.6
+0.5
N.D.
+7.3
-0.2
stress
R2A with Lomefloxacin 0.001 mM
+5.2
-0.1
N.D.
+1.9
+0.0
stress
R2A with Nickel (II) chloride 0.35 mM
-0.0
+0.4
N.D.
+7.8
-0.2
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