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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS17555 and RR42_RS17560 are separated by 199 nucleotides
RR42_RS17560 and RR42_RS17565 are separated by 71 nucleotides
RR42_RS17565 and RR42_RS17570 are separated by 283 nucleotides
RR42_RS17570 and RR42_RS17575 are separated by 97 nucleotides
RR42_RS17555: RR42_RS17555 - hypothetical protein, at 3,799,703 to 3,800,266
_RS17555
RR42_RS17560: RR42_RS17560 - Fur family transcriptional regulator, at 3,800,466 to 3,800,897
_RS17560
RR42_RS17565: RR42_RS17565 - LysR family transcriptional regulator, at 3,800,969 to 3,801,958
_RS17565
RR42_RS17570: RR42_RS17570 - glyceraldehyde-3-phosphate dehydrogenase, at 3,802,242 to 3,803,240
_RS17570
RR42_RS17575: RR42_RS17575 - transketolase, at 3,803,338 to 3,805,374
_RS17575
Group
Condition
RR42
_RS17555
RR42
_RS17560
RR42
_RS17565
RR42
_RS17570
RR42
_RS17575
stress
R2A with Doxycycline hyclate 0.0001 mg/ml
-0.8
-4.4
-4.6
N.D.
N.D.
stress
R2A with D-Cycloserine 0.5 mg/ml
-0.2
-5.6
-2.3
N.D.
N.D.
carbon source
Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
-1.8
-2.7
-3.2
N.D.
N.D.
lb
LB
+1.6
-3.7
-5.1
N.D.
N.D.
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
-1.2
-3.0
-2.4
N.D.
N.D.
carbon source
D-Gluconic Acid (C)
-0.6
-0.5
-4.8
N.D.
N.D.
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
-1.1
-2.2
-2.4
N.D.
N.D.
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
-1.4
-2.7
-1.4
N.D.
N.D.
stress
R2A with Lomefloxacin 0.00075 mM
-0.9
-2.4
-2.2
N.D.
N.D.
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
-0.5
-3.3
-1.7
N.D.
N.D.
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
-0.9
-2.3
-2.2
N.D.
N.D.
nitrogen source
nitrite (N)
+0.3
-2.6
-3.1
N.D.
N.D.
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
+0.7
-2.9
-2.9
N.D.
N.D.
stress
R2A with Paraquat dichloride 0.064 mg/ml
+0.5
-3.1
-1.7
N.D.
N.D.
carbon source
Carbon source Phenylacetic 2.5 mM
-1.7
-0.8
-1.8
N.D.
N.D.
carbon source
Protocatechuic Acid (C)
-0.2
-2.6
-1.3
N.D.
N.D.
carbon source
Octanoic (C)
-0.8
-1.5
-1.8
N.D.
N.D.
carbon source
4-Hydroxybenzoic Acid (C)
-0.6
-1.4
-2.0
N.D.
N.D.
stress
R2A with Lomefloxacin 0.001 mM
-1.3
-1.1
-1.2
N.D.
N.D.
stress
R2A with Polymyxin B sulfate 0.005 mg/ml
-1.4
-2.4
+0.4
N.D.
N.D.
stress
R2A with Zinc 0.1 mM
-2.1
-2.2
+0.9
N.D.
N.D.
carbon source
Protocatechuic Acid (C)
+0.8
-2.7
-1.4
N.D.
N.D.
stress
R2A with Cobalt chloride 0.5 mM
-0.2
-3.2
+0.4
N.D.
N.D.
stress
R2A with Vancomycin 0.5 mg/ml
-1.3
-2.0
+3.8
N.D.
N.D.
stress
R2A with Vancomycin 0.5 mg/ml
-1.1
-2.0
+3.7
N.D.
N.D.
stress
R2A with Nickel (II) chloride 0.35 mM
-1.2
+1.3
+1.7
N.D.
N.D.
stress
R2A with Nickel (II) chloride 0.5 mM
-0.8
+1.8
+3.5
N.D.
N.D.
carbon source
adipate (C)
-0.3
+0.7
+5.3
N.D.
N.D.
carbon source
adipate (C)
+0.3
+1.0
+6.1
N.D.
N.D.
stress
R2A with Cobalt chloride 0.3 mM
-1.2
+5.7
+2.8
N.D.
N.D.
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