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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS17495 and RR42_RS17500 are separated by 135 nucleotides
RR42_RS17500 and RR42_RS17505 overlap by 4 nucleotides
RR42_RS17505 and RR42_RS17510 are separated by 294 nucleotides
RR42_RS17510 and RR42_RS17515 are separated by 43 nucleotides
RR42_RS17495: RR42_RS17495 - hypothetical protein, at 3,786,865 to 3,787,047
_RS17495
RR42_RS17500: RR42_RS17500 - NAD(P) transhydrogenase, at 3,787,183 to 3,787,515
_RS17500
RR42_RS17505: RR42_RS17505 - NAD synthetase, at 3,787,512 to 3,788,972
_RS17505
RR42_RS17510: RR42_RS17510 - chemotaxis protein CheY, at 3,789,267 to 3,790,313
_RS17510
RR42_RS17515: RR42_RS17515 - DNA methyltransferase, at 3,790,357 to 3,791,631
_RS17515
Group
Condition
RR42
_RS17495
RR42
_RS17500
RR42
_RS17505
RR42
_RS17510
RR42
_RS17515
carbon source
Ethanol (C)
-0.2
N.D.
-2.5
-0.4
+0.1
carbon source
L-Tryptophan (C)
+0.1
N.D.
-2.0
-0.5
-0.2
carbon source
L-Proline (C)
+0.1
N.D.
-1.2
-1.0
-0.1
carbon source
Pimelic (C)
+0.1
N.D.
-0.6
-1.4
-0.2
carbon source
Ethanol (C)
+0.5
N.D.
-2.0
-0.5
-0.1
carbon source
L-Tryptophan (C)
+0.6
N.D.
-2.0
-0.4
-0.2
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
+0.2
N.D.
-1.0
-0.9
-0.1
carbon source
Azelaic (C)
-0.5
N.D.
-0.7
-0.4
-0.1
carbon source
Pimelic (C)
+0.2
N.D.
-0.6
-1.1
-0.0
nitrogen source
L-Valine (N)
-0.2
N.D.
-0.4
-0.9
+0.2
nitrogen source
L-Tryptophan (N)
+0.1
N.D.
-0.9
-0.4
-0.2
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
+0.4
N.D.
-0.8
-0.7
-0.1
nitrogen source
L-Isoleucine (N)
-0.2
N.D.
-0.6
-0.6
+0.2
nitrogen source
L-Valine (N)
+0.4
N.D.
-0.4
-1.0
-0.2
carbon source
L-Leucine (C)
+0.3
N.D.
-1.0
-0.4
-0.1
carbon source
D,L-Lactate (C)
+0.3
N.D.
-1.0
-0.3
-0.1
nitrogen source
L-Citrulline (N)
-0.7
N.D.
-0.6
-0.0
+0.3
carbon source
D-Gluconic Acid (C)
+0.4
N.D.
-0.7
-0.4
-0.2
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
+0.3
N.D.
-0.7
-0.7
+0.3
carbon source
L-Lactate (C)
+0.5
N.D.
-0.8
-0.4
-0.1
carbon source
adipate (C)
+0.1
N.D.
+0.5
-0.9
-0.2
stress
R2A with nitrate 150 mM
+0.3
N.D.
+0.2
-0.8
-0.3
carbon source
L-Leucine (C)
+0.5
N.D.
-0.8
-0.5
+0.1
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
+0.5
N.D.
-0.7
-0.2
-0.1
nitrogen source
L-Isoleucine (N)
+0.6
N.D.
-0.5
-0.6
+0.0
carbon source
Carbon source D,L-Lactate 10 mM
+0.8
N.D.
-0.7
-0.4
+0.0
carbon source
adipate (C)
+0.3
N.D.
+0.5
-0.8
-0.3
carbon source
L-Asparagine (C)
+0.9
N.D.
-0.1
-0.5
-0.1
nitrogen source
L-Leucine (N)
+1.0
N.D.
-0.3
-0.3
+0.1
carbon source
Heptanoic (C)
-0.4
N.D.
+0.3
+1.4
+0.1
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