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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS17355 and RR42_RS17360 are separated by 55 nucleotides
RR42_RS17360 and RR42_RS17365 are separated by 65 nucleotides
RR42_RS17365 and RR42_RS17370 are separated by 92 nucleotides
RR42_RS17370 and RR42_RS17375 are separated by 77 nucleotides
RR42_RS17355: RR42_RS17355 - hypothetical protein, at 3,756,274 to 3,757,002
_RS17355
RR42_RS17360: RR42_RS17360 - pyrroline-5-carboxylate reductase, at 3,757,058 to 3,757,882
_RS17360
RR42_RS17365: RR42_RS17365 - 4-hydroxybenzoate polyprenyltransferase, at 3,757,948 to 3,758,841
_RS17365
RR42_RS17370: RR42_RS17370 - ferritin, at 3,758,934 to 3,759,419
_RS17370
RR42_RS17375: RR42_RS17375 - hypothetical protein, at 3,759,497 to 3,759,691
_RS17375
Group
Condition
RR42
_RS17355
RR42
_RS17360
RR42
_RS17365
RR42
_RS17370
RR42
_RS17375
lb
LB
-4.3
N.D.
N.D.
N.D.
-5.4
stress
R2A with D-Cycloserine 0.5 mg/ml
-0.5
N.D.
N.D.
N.D.
-4.5
carbon source
L-Asparagine (C)
-3.4
N.D.
N.D.
N.D.
-1.5
carbon source
Carbon source D,L-Lactate 10 mM
-3.4
N.D.
N.D.
N.D.
-0.9
r2a
R2A
-4.0
N.D.
N.D.
N.D.
-0.1
oxygen_nitrate
exometabolites; 5% oxygen; 5 mM nitrate
-3.2
N.D.
N.D.
N.D.
-0.9
nitrogen source
L-Glutamine (N)
-3.6
N.D.
N.D.
N.D.
-0.3
carbon source
Hexanoic (C)
-2.0
N.D.
N.D.
N.D.
-1.8
stress
R2A with Cephalothin 0.25 mg/ml
-2.8
N.D.
N.D.
N.D.
-0.7
stress
R2A with Nickel (II) chloride 0.25 mM
-2.9
N.D.
N.D.
N.D.
-0.5
stress
R2A with Vancomycin 0.5 mg/ml
-2.7
N.D.
N.D.
N.D.
-0.5
carbon source
L-Malic (C)
-3.3
N.D.
N.D.
N.D.
+0.2
carbon source
Protocatechuic Acid (C)
+0.3
N.D.
N.D.
N.D.
-3.4
oxygen_nitrate
exometabolites; 10% oxygen; 5 mM nitrate
-3.1
N.D.
N.D.
N.D.
+0.0
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
+0.2
N.D.
N.D.
N.D.
-3.1
r2a
R2A
-1.9
N.D.
N.D.
N.D.
-0.7
nitrogen source
L-Citrulline (N)
-2.3
N.D.
N.D.
N.D.
-0.2
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
+2.0
N.D.
N.D.
N.D.
-4.5
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
+1.8
N.D.
N.D.
N.D.
-3.1
carbon source
Disodium Glutarate (C)
-2.0
N.D.
N.D.
N.D.
+0.8
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
+2.2
N.D.
N.D.
N.D.
-3.3
stress
R2A with Lomefloxacin 0.001 mM
+1.6
N.D.
N.D.
N.D.
-2.6
carbon source
Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
+2.5
N.D.
N.D.
N.D.
-2.5
stress
R2A with Doxycycline hyclate 0.0001 mg/ml
+1.5
N.D.
N.D.
N.D.
-1.1
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
+2.9
N.D.
N.D.
N.D.
-2.3
stress
R2A with Cobalt chloride 0.5 mM
+2.6
N.D.
N.D.
N.D.
-0.7
nitrogen source
L-Serine (N)
+2.6
N.D.
N.D.
N.D.
-0.1
stress
R2A with Lomefloxacin 0.00075 mM
+3.4
N.D.
N.D.
N.D.
-0.5
stress
R2A with Cobalt chloride 0.3 mM
+2.3
N.D.
N.D.
N.D.
+0.6
stress
R2A with Nickel (II) chloride 0.5 mM
+3.0
N.D.
N.D.
N.D.
+0.3
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