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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS17335 and RR42_RS17340 are separated by 45 nucleotides
RR42_RS17340 and RR42_RS17345 are separated by 84 nucleotides
RR42_RS17345 and RR42_RS17350 are separated by 34 nucleotides
RR42_RS17350 and RR42_RS17355 are separated by 62 nucleotides
RR42_RS17335: RR42_RS17335 - DeoR family transcriptional regulator, at 3,752,683 to 3,753,372
_RS17335
RR42_RS17340: RR42_RS17340 - glutathione peroxidase, at 3,753,418 to 3,753,909
_RS17340
RR42_RS17345: RR42_RS17345 - twitching motility protein PilT, at 3,753,994 to 3,755,133
_RS17345
RR42_RS17350: RR42_RS17350 - twitching motility protein PilT, at 3,755,168 to 3,756,211
_RS17350
RR42_RS17355: RR42_RS17355 - hypothetical protein, at 3,756,274 to 3,757,002
_RS17355
Group
Condition
RR42
_RS17335
RR42
_RS17340
RR42
_RS17345
RR42
_RS17350
RR42
_RS17355
carbon source
L-Malic (C)
+0.3
-0.7
-0.3
-0.1
-3.3
lb
LB
+0.1
+0.5
-0.4
+0.0
-4.3
r2a
R2A
-0.1
+0.2
+0.1
+0.1
-4.0
carbon source
Carbon source D,L-Lactate 10 mM
-0.1
-0.0
-0.2
+0.0
-3.4
nitrogen source
L-Glutamine (N)
-0.1
-0.0
+0.2
-0.2
-3.6
oxygen_nitrate
exometabolites; 5% oxygen; 5 mM nitrate
-0.6
+0.3
-0.1
+0.0
-3.2
stress
R2A with Nickel (II) chloride 0.25 mM
-0.4
+0.0
+0.0
-0.2
-2.9
carbon source
L-Asparagine (C)
+0.2
-0.2
+0.2
+0.1
-3.4
stress
R2A with Cephalothin 0.25 mg/ml
+0.0
+0.0
-0.0
-0.1
-2.8
oxygen_nitrate
exometabolites; 10% oxygen; 5 mM nitrate
+0.0
+0.3
+0.3
-0.1
-3.1
nitrogen source
L-Phenylalanine (N)
+0.4
-0.3
-0.3
+0.0
-2.0
nitrogen source
L-Citrulline (N)
+0.7
-0.3
-0.2
+0.1
-2.3
stress
R2A with Vancomycin 0.5 mg/ml
+0.1
+0.4
+0.5
-0.0
-2.7
carbon source
D,L-Lactate (C)
+0.3
-0.3
+0.2
+0.2
-2.1
carbon source
Hexanoic (C)
-0.5
+0.4
-0.1
+0.5
-2.0
stress
R2A with Vancomycin 0.5 mg/ml
+0.5
-0.7
+0.1
+0.3
-1.4
carbon source
L-Tryptophan (C)
+0.2
+1.0
-0.2
-0.0
-1.6
carbon source
Dodecandioic (C)
+0.7
-0.0
+0.0
+0.7
-1.9
carbon source
Suberic (C)
+0.5
-1.1
-0.4
+0.3
+0.7
stress
R2A with Nickel (II) chloride 0.35 mM
-0.3
+0.5
+0.1
-0.2
+1.9
stress
R2A with Cobalt chloride 0.5 mM
+0.4
-0.9
-0.0
+0.0
+2.6
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
-0.2
+0.1
-0.0
-0.4
+2.9
stress
R2A with Cobalt chloride 0.3 mM
-0.3
+0.2
+0.1
+0.3
+2.3
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
-0.3
+0.3
+0.3
+0.2
+2.2
stress
R2A with Nickel (II) chloride 0.5 mM
-0.4
+0.2
-0.2
+0.3
+3.0
stress
R2A with Doxycycline hyclate 0.0001 mg/ml
+0.7
+0.8
+0.0
+0.1
+1.5
nitrogen source
L-Serine (N)
-0.0
+0.6
-0.1
-0.0
+2.6
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
+0.5
+0.3
-0.2
+0.5
+2.0
carbon source
Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
+0.0
+0.2
+0.5
+0.1
+2.5
stress
R2A with Lomefloxacin 0.00075 mM
+0.7
-0.8
+0.1
+0.2
+3.4
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