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Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS17300 and RR42_RS17305 are separated by 2 nucleotides
RR42_RS17305 and RR42_RS17310 are separated by 30 nucleotides
RR42_RS17310 and RR42_RS17315 are separated by 65 nucleotides
RR42_RS17315 and RR42_RS17320 are separated by 164 nucleotides
RR42_RS17300: RR42_RS17300 - D-lactate dehydrogenase, FAD-linked subunit GlcD (EC 1.1.99.6)
(from data)
, at 3,745,961 to 3,747,454
_RS17300
RR42_RS17305: RR42_RS17305 - ion transporter, at 3,747,457 to 3,748,428
_RS17305
RR42_RS17310: RR42_RS17310 - D-lactate dehydrogenase, FAD binding subunit GlcE (EC 1.1.99.6)
(from data)
, at 3,748,459 to 3,749,583
_RS17310
RR42_RS17315: RR42_RS17315 - D-lactate dehydrogenase, iron-sulfur subunit GlcF (EC 1.1.99.6)
(from data)
, at 3,749,649 to 3,750,914
_RS17315
RR42_RS17320: RR42_RS17320 - murein hydrolase transporter LrgA, at 3,751,079 to 3,751,465
_RS17320
Group
Condition
RR42
_RS17300
RR42
_RS17305
RR42
_RS17310
RR42
_RS17315
RR42
_RS17320
carbon source
D-Lactate (C)
-1.5
-1.0
-2.9
-1.3
-0.8
carbon source
D-Lactate (C)
-2.2
-0.9
-2.3
-1.6
-0.1
nitrogen source
nitrite (N)
-1.6
-1.4
-0.2
-0.4
+0.1
carbon source
Octanoic (C)
-0.8
-1.4
-0.7
-0.1
-0.4
carbon source
Octanoic (C)
-1.1
-1.1
-0.5
-0.2
+0.0
carbon source
4-Hydroxybenzoic Acid (C)
-0.9
-0.2
-1.4
-0.4
-0.1
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
-0.0
-0.2
-0.5
-0.4
-1.1
carbon source
4-Hydroxybenzoic Acid (C)
-0.9
+0.2
-1.1
-0.7
+0.4
carbon source
Suberic (C)
-0.3
-0.7
-0.3
+0.1
-1.0
carbon source
Suberic (C)
-0.3
-0.5
-0.6
+0.1
-0.8
nitrogen source
Glycine (N)
-0.7
-0.6
-0.7
+0.1
-0.3
carbon source
Azelaic (C)
-0.4
-0.2
-0.6
-0.2
-0.5
carbon source
Heptanoic (C)
-0.2
-0.5
-0.1
-0.1
-1.1
nitrogen source
D-Alanine (N)
-0.5
-0.7
-0.2
-0.0
-0.6
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
-0.9
-0.4
-1.0
-0.4
+1.0
carbon source
Valeric (C)
-0.2
-0.9
+0.2
-0.1
-0.6
nitrogen source
L-Lysine (N)
-0.5
-0.8
+0.1
-0.2
-0.1
carbon source
adipate (C)
-0.4
-0.5
-0.9
-0.1
+0.3
carbon source
Protocatechuic Acid (C)
+0.0
-1.0
-0.0
+0.6
-1.0
carbon source
L-Histidine (C)
-0.3
-0.0
-0.8
-0.6
+0.3
carbon source
adipate (C)
-0.4
-0.7
-0.2
-0.5
+0.4
carbon source
Protocatechuic Acid (C)
-0.0
-1.3
+0.2
+0.2
-0.1
stress
R2A with Nickel (II) chloride 0.35 mM
-0.3
+0.5
+0.1
-0.1
-1.1
carbon source
Hexanoic (C)
-0.0
-0.7
-0.4
-0.2
+0.7
nitrogen source
L-Leucine (N)
-0.4
-0.3
+0.7
-0.1
-0.7
lb
LB
+0.8
+0.8
-1.9
-0.6
+0.5
stress
R2A with D-Cycloserine 0.5 mg/ml
+0.2
+0.1
+0.5
+0.3
-1.3
stress
R2A with Vancomycin 0.5 mg/ml
+0.3
-0.5
-0.4
+0.4
+0.4
nitrogen source
L-Glutamine (N)
+0.3
+0.6
+0.7
+0.2
-1.5
stress
R2A with nitrate 150 mM
+0.2
-0.3
+0.7
+0.1
+0.6
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