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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS17165 and RR42_RS17170 are separated by 117 nucleotides
RR42_RS17170 and RR42_RS17175 are separated by 189 nucleotides
RR42_RS17175 and RR42_RS17180 are separated by 396 nucleotides
RR42_RS17180 and RR42_RS17185 are separated by 254 nucleotides
RR42_RS17165: RR42_RS17165 - hypothetical protein, at 3,716,608 to 3,716,919
_RS17165
RR42_RS17170: RR42_RS17170 - argininosuccinate synthase, at 3,717,037 to 3,718,266
_RS17170
RR42_RS17175: RR42_RS17175 - ornithine carbamoyltransferase, at 3,718,456 to 3,719,379
_RS17175
RR42_RS17180: RR42_RS17180 - hypothetical protein, at 3,719,776 to 3,720,075
_RS17180
RR42_RS17185: RR42_RS17185 - 30S ribosomal protein S20, at 3,720,330 to 3,720,596
_RS17185
Group
Condition
RR42
_RS17165
RR42
_RS17170
RR42
_RS17175
RR42
_RS17180
RR42
_RS17185
nitrogen source
nitrite (N)
+0.2
N.D.
N.D.
-4.2
N.D.
carbon source
Valeric (C)
-1.1
N.D.
N.D.
-2.2
N.D.
carbon source
Hexanoic (C)
-0.6
N.D.
N.D.
-2.4
N.D.
carbon source
Carbon source Phenylacetic 2.5 mM
-0.7
N.D.
N.D.
-1.8
N.D.
carbon source
Hexanoic (C)
-0.3
N.D.
N.D.
-2.1
N.D.
carbon source
Carbon source Phenylacetic 2.5 mM
+0.1
N.D.
N.D.
-1.9
N.D.
carbon source
Valeric (C)
-0.2
N.D.
N.D.
-1.1
N.D.
carbon source
Dodecandioic (C)
-0.7
N.D.
N.D.
-0.7
N.D.
stress
R2A with Zinc 0.1 mM
-0.0
N.D.
N.D.
-1.2
N.D.
carbon source
Protocatechuic Acid (C)
-0.0
N.D.
N.D.
-1.2
N.D.
carbon source
Heptanoic (C)
+0.2
N.D.
N.D.
-1.3
N.D.
stress
R2A with D-Cycloserine 0.5 mg/ml
+0.2
N.D.
N.D.
-1.2
N.D.
nitrogen source
L-Asparagine (N)
+0.0
N.D.
N.D.
-1.1
N.D.
stress
R2A with Paraquat dichloride 0.064 mg/ml
-1.1
N.D.
N.D.
+0.2
N.D.
carbon source
Protocatechuic Acid (C)
+0.2
N.D.
N.D.
-1.0
N.D.
carbon source
Heptanoic (C)
+0.3
N.D.
N.D.
-1.1
N.D.
nitrogen source
nitrate (N)
+0.3
N.D.
N.D.
-1.0
N.D.
lb
LB
+0.5
N.D.
N.D.
-1.1
N.D.
stress
R2A with Lomefloxacin 0.00075 mM
-0.9
N.D.
N.D.
+0.6
N.D.
carbon source
Trisodium citrate (C)
+0.9
N.D.
N.D.
-0.5
N.D.
stress
R2A with Cobalt chloride 0.3 mM
+1.2
N.D.
N.D.
-0.7
N.D.
stress
R2A with Vancomycin 0.5 mg/ml
+0.9
N.D.
N.D.
-0.3
N.D.
stress
R2A with Lomefloxacin 0.001 mM
-0.4
N.D.
N.D.
+1.1
N.D.
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
-0.4
N.D.
N.D.
+1.2
N.D.
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
-0.3
N.D.
N.D.
+1.4
N.D.
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
+0.2
N.D.
N.D.
+1.5
N.D.
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
-0.2
N.D.
N.D.
+2.0
N.D.
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
+0.3
N.D.
N.D.
+1.7
N.D.
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
+0.2
N.D.
N.D.
+1.8
N.D.
carbon source
Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
+0.7
N.D.
N.D.
+2.2
N.D.
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