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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS16980 and RR42_RS16985 are separated by 639 nucleotides
RR42_RS16985 and RR42_RS16990 are separated by 50 nucleotides
RR42_RS16990 and RR42_RS16995 are separated by 90 nucleotides
RR42_RS16995 and RR42_RS17000 are separated by 200 nucleotides
RR42_RS16980: RR42_RS16980 - branched-chain amino acid ABC transporter substrate-binding protein, at 3,675,147 to 3,676,352
_RS16980
RR42_RS16985: RR42_RS16985 - 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, at 3,676,992 to 3,677,954
_RS16985
RR42_RS16990: RR42_RS16990 - peptidylprolyl isomerase, at 3,678,005 to 3,678,502
_RS16990
RR42_RS16995: RR42_RS16995 - hypothetical protein, at 3,678,593 to 3,679,267
_RS16995
RR42_RS17000: RR42_RS17000 - 50S ribosomal protein L28, at 3,679,468 to 3,679,701
_RS17000
Group
Condition
RR42
_RS16980
RR42
_RS16985
RR42
_RS16990
RR42
_RS16995
RR42
_RS17000
nitrogen source
D-Alanine (N)
-3.3
N.D.
N.D.
-0.3
N.D.
nitrogen source
D-Alanine (N)
-3.1
N.D.
N.D.
-0.3
N.D.
nitrogen source
L-Leucine (N)
-3.1
N.D.
N.D.
-0.3
N.D.
nitrogen source
L-Leucine (N)
-3.2
N.D.
N.D.
-0.0
N.D.
nitrogen source
L-Isoleucine (N)
-2.8
N.D.
N.D.
-0.5
N.D.
nitrogen source
L-Tryptophan (N)
-3.0
N.D.
N.D.
-0.2
N.D.
nitrogen source
L-Tryptophan (N)
-3.0
N.D.
N.D.
-0.2
N.D.
nitrogen source
L-Valine (N)
-2.8
N.D.
N.D.
-0.3
N.D.
nitrogen source
L-Lysine (N)
-2.9
N.D.
N.D.
-0.1
N.D.
nitrogen source
L-Isoleucine (N)
-2.7
N.D.
N.D.
-0.2
N.D.
nitrogen source
L-Citrulline (N)
-2.7
N.D.
N.D.
-0.2
N.D.
nitrogen source
L-Valine (N)
-2.7
N.D.
N.D.
-0.0
N.D.
nitrogen source
L-Serine (N)
-2.2
N.D.
N.D.
-0.4
N.D.
carbon source
L-Leucine (C)
-1.9
N.D.
N.D.
-0.4
N.D.
nitrogen source
L-Serine (N)
-2.2
N.D.
N.D.
-0.0
N.D.
carbon source
L-Leucine (C)
-2.0
N.D.
N.D.
-0.3
N.D.
carbon source
L-Tryptophan (C)
-1.8
N.D.
N.D.
-0.3
N.D.
carbon source
L-Tryptophan (C)
-1.6
N.D.
N.D.
-0.3
N.D.
carbon source
L-Proline (C)
-1.3
N.D.
N.D.
-0.6
N.D.
stress
R2A with Lomefloxacin 0.001 mM
-0.3
N.D.
N.D.
-0.7
N.D.
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
-0.6
N.D.
N.D.
-0.4
N.D.
nitrogen source
Glycine (N)
-0.8
N.D.
N.D.
-0.1
N.D.
nitrogen source
L-Phenylalanine (N)
-0.8
N.D.
N.D.
+0.1
N.D.
nitrogen source
L-Glutamine (N)
-0.2
N.D.
N.D.
-0.5
N.D.
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
-0.4
N.D.
N.D.
-0.2
N.D.
stress
R2A with Lomefloxacin 0.00075 mM
-0.5
N.D.
N.D.
-0.1
N.D.
stress
R2A with Nickel (II) chloride 0.35 mM
-0.5
N.D.
N.D.
+0.0
N.D.
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
-0.4
N.D.
N.D.
+0.1
N.D.
carbon source
4-Hydroxybenzoic Acid (C)
+0.4
N.D.
N.D.
-0.2
N.D.
carbon source
adipate (C)
+0.5
N.D.
N.D.
-0.1
N.D.
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