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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS16850 and RR42_RS16855 are separated by 86 nucleotides
RR42_RS16855 and RR42_RS16860 are separated by 889 nucleotides
RR42_RS16860 and RR42_RS16865 are separated by 3 nucleotides
RR42_RS16865 and RR42_RS16870 overlap by 4 nucleotides
RR42_RS16850: RR42_RS16850 - cyclase, at 3,644,836 to 3,645,741
_RS16850
RR42_RS16855: RR42_RS16855 - alpha/beta hydrolase, at 3,645,828 to 3,646,862
_RS16855
RR42_RS16860: RR42_RS16860 - pilus assembly protein PilE, at 3,647,752 to 3,648,180
_RS16860
RR42_RS16865: RR42_RS16865 - general secretion pathway protein GspH, at 3,648,184 to 3,648,672
_RS16865
RR42_RS16870: RR42_RS16870 - pilus assembly protein, at 3,648,669 to 3,649,259
_RS16870
Group
Condition
RR42
_RS16850
RR42
_RS16855
RR42
_RS16860
RR42
_RS16865
RR42
_RS16870
stress
R2A with Dimethyl Sulfoxide 5 vol%
-0.3
-0.4
+0.1
-0.4
-0.4
stress
R2A with Thallium(I) acetate 0.001 mg/ml
-0.4
-0.3
-0.3
-0.5
+0.2
nitrogen source
L-Serine (N)
-0.5
-0.4
-0.2
-0.0
-0.1
stress
R2A with Lomefloxacin 0.00075 mM
-0.1
-0.3
-0.2
-0.6
+0.0
r2a
R2A
-0.4
-0.1
-0.0
-0.2
-0.4
stress
R2A with Nickel (II) chloride 0.35 mM
-0.1
-0.4
-0.3
-0.1
-0.2
nitrogen source
casaminos (N)
-0.3
-0.3
-0.0
-0.4
-0.0
carbon source
Valeric (C)
-0.3
+0.2
-0.2
-0.5
-0.3
carbon source
Carbon source D,L-Lactate 10 mM
-0.1
+0.0
-0.3
-0.2
-0.5
stress
R2A with Cisplatin 0.001 mg/ml
-0.3
+0.1
-0.0
+0.1
-0.8
stress
R2A with Zinc 0.1 mM
-0.2
-0.6
+0.2
+0.0
-0.3
nitrogen source
L-Threonine (N)
-0.7
+0.2
+0.1
-0.3
-0.1
stress
R2A with nitrate 200 mM
-0.1
-0.1
-0.3
+0.3
-0.5
carbon source
succinate (C)
-0.5
-0.0
-0.2
+0.3
-0.1
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
-0.4
-0.1
-0.3
-0.0
+0.4
nitrogen source
L-Valine (N)
+0.3
-0.2
-0.4
-0.3
+0.2
carbon source
Protocatechuic Acid (C)
-0.1
+0.4
-0.2
-0.3
-0.1
stress
R2A with Vancomycin 0.5 mg/ml
-0.4
-0.2
+0.2
+0.3
-0.0
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
+0.1
-0.4
-0.2
-0.1
+0.5
stress
R2A with Doxycycline hyclate 0.0001 mg/ml
+0.2
-0.2
+0.1
+0.3
-0.4
carbon source
Heptanoic (C)
-0.2
+0.3
-0.2
+0.3
-0.1
carbon source
Protocatechuic Acid (C)
+0.4
+0.1
+0.1
-0.5
+0.0
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
-0.2
-0.1
-0.2
+0.3
+0.4
stress
R2A with Cobalt chloride 0.3 mM
+0.3
+0.4
-0.2
-0.3
+0.1
carbon source
Azelaic (C)
+0.2
+0.3
+0.1
-0.4
+0.1
nitrogen source
nitrate (N)
+0.3
-0.2
+0.2
-0.2
+0.3
carbon source
Azelaic (C)
+0.4
+0.3
-0.0
-0.2
+0.3
lb
LB
+0.1
+0.0
+0.6
+0.5
-0.4
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
+0.4
-0.2
+0.3
+0.1
+0.5
stress
R2A with Nickel (II) chloride 0.5 mM
+0.3
+0.5
+0.6
+0.5
-0.2
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RR42_RS16860
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