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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS16785 and RR42_RS16790 are separated by 42 nucleotides
RR42_RS16790 and RR42_RS16795 are separated by 55 nucleotides
RR42_RS16795 and RR42_RS16800 are separated by 3 nucleotides
RR42_RS16800 and RR42_RS16805 are separated by 53 nucleotides
RR42_RS16785: RR42_RS16785 - manganese transporter, at 3,632,041 to 3,633,357
_RS16785
RR42_RS16790: RR42_RS16790 - enoyl-CoA hydratase, at 3,633,400 to 3,634,200
_RS16790
RR42_RS16795: RR42_RS16795 - acyl-CoA dehydrogenase, at 3,634,256 to 3,635,407
_RS16795
RR42_RS16800: RR42_RS16800 - 3-oxoacyl-ACP reductase, at 3,635,411 to 3,636,241
_RS16800
RR42_RS16805: RR42_RS16805 - dehydratase, at 3,636,295 to 3,636,714
_RS16805
Group
Condition
RR42
_RS16785
RR42
_RS16790
RR42
_RS16795
RR42
_RS16800
RR42
_RS16805
stress
R2A with Vancomycin 0.5 mg/ml
-0.8
-0.8
+0.3
-0.2
N.D.
stress
R2A with Cephalothin 0.25 mg/ml
-0.8
-0.3
-0.3
+0.0
N.D.
temperature
R2A 23C
-0.4
-0.0
-0.2
-0.4
N.D.
stress
R2A with Lomefloxacin 0.001 mM
-0.3
-0.3
-0.3
+0.1
N.D.
stress
R2A with Dimethyl Sulfoxide 5 vol%
-0.3
-0.5
+0.0
-0.1
N.D.
carbon source
Pimelic (C)
-0.5
-0.3
+0.0
+0.1
N.D.
stress
R2A with Doxycycline hyclate 0.0001 mg/ml
-0.4
-0.3
-0.0
+0.2
N.D.
carbon source
Protocatechuic Acid (C)
-0.3
-0.4
+0.0
+0.2
N.D.
stress
R2A with Zinc 0.1 mM
-0.5
-0.4
+0.3
+0.3
N.D.
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
-0.2
+0.3
-0.4
+0.2
N.D.
r2a
R2A
-0.5
+0.2
+0.0
+0.2
N.D.
carbon source
D-Gluconic Acid (C)
-0.3
+0.1
+0.3
-0.2
N.D.
carbon source
a-Ketoglutaric (C)
-0.4
+0.4
+0.0
-0.0
N.D.
carbon source
Protocatechuic Acid (C)
+0.4
-0.2
+0.0
-0.2
N.D.
carbon source
Carbon source Phenylacetic 2.5 mM
+0.5
-0.2
+0.2
-0.3
N.D.
carbon source
Heptanoic (C)
+0.3
-0.5
+0.0
+0.3
N.D.
carbon source
Heptanoic (C)
+0.3
-0.2
-0.2
+0.3
N.D.
nitrogen source
Glycine (N)
+0.4
+0.2
+0.0
-0.4
N.D.
carbon source
propionate (C)
-0.2
+0.1
-0.1
+0.4
N.D.
carbon source
L-Lactate (C)
-0.3
+0.5
+0.1
+0.0
N.D.
stress
R2A with Chloride 300 mM
-0.0
+0.5
-0.2
+0.2
N.D.
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
+0.4
+0.2
-0.5
+0.4
N.D.
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
+0.4
+0.0
-0.2
+0.4
N.D.
nitrogen source
L-Tryptophan (N)
-0.1
+0.2
+0.4
+0.3
N.D.
nitrogen source
L-Leucine (N)
-0.0
+0.5
+0.1
+0.3
N.D.
nitrogen source
nitrate (N)
+0.2
+0.5
-0.1
+0.4
N.D.
nitrogen source
L-Isoleucine (N)
+0.3
+0.2
+0.2
+0.2
N.D.
carbon source
Ethanol (C)
+0.3
+0.0
+0.2
+0.3
N.D.
r2a
R2A
+0.2
+0.5
+0.1
+0.4
N.D.
lb
LB
+0.0
+0.4
+0.2
+0.6
N.D.
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