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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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5
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS16720 and RR42_RS16725 are separated by 74 nucleotides
RR42_RS16725 and RR42_RS16730 are separated by 49 nucleotides
RR42_RS16730 and RR42_RS16735 are separated by 34 nucleotides
RR42_RS16735 and RR42_RS16740 are separated by 219 nucleotides
RR42_RS16720: RR42_RS16720 - hypothetical protein, at 3,618,742 to 3,619,263
_RS16720
RR42_RS16725: RR42_RS16725 - fatty acid hydroxylase, at 3,619,338 to 3,620,237
_RS16725
RR42_RS16730: RR42_RS16730 - histidine kinase, at 3,620,287 to 3,621,345
_RS16730
RR42_RS16735: RR42_RS16735 - LytR family transcriptional regulator, at 3,621,380 to 3,622,198
_RS16735
RR42_RS16740: RR42_RS16740 - hypothetical protein, at 3,622,418 to 3,622,684
_RS16740
Group
Condition
RR42
_RS16720
RR42
_RS16725
RR42
_RS16730
RR42
_RS16735
RR42
_RS16740
lb
LB
+0.5
+0.5
+0.0
+0.3
-4.6
nitrogen source
casaminos (N)
+0.1
-0.1
+0.3
-0.1
-2.5
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
-0.0
-0.0
+0.1
-0.5
-0.8
carbon source
a-Ketoglutaric (C)
+0.2
+0.2
-0.1
+0.2
-1.4
carbon source
L-Asparagine (C)
-0.1
-0.0
+0.2
-0.2
-0.8
carbon source
4-Hydroxybenzoic Acid (C)
-0.4
+0.0
-0.2
+0.3
-0.6
stress
R2A with Sisomicin 0.035 mg/ml
-0.3
-0.0
-0.1
+0.3
-0.7
stress
R2A with Cobalt chloride 0.5 mM
-0.6
-0.4
-0.1
-0.1
+0.4
nitrogen source
L-Glutamine (N)
-0.0
-0.1
-0.1
+0.3
-0.8
stress
R2A with Zinc 0.1 mM
-0.8
-0.1
+0.1
-0.4
+0.7
carbon source
Carbon source Phenylacetic 2.5 mM
-0.1
+0.1
+0.0
+0.3
-0.9
stress
R2A with Vancomycin 0.5 mg/ml
-0.5
+0.0
-0.4
-0.1
+0.5
stress
R2A with A22 0.01 mg/ml
-0.4
-0.3
+0.2
-0.2
+0.2
nitrogen source
L-Phenylalanine (N)
+0.2
+0.1
+0.2
-0.1
-0.8
carbon source
D,L-Lactate (C)
-0.1
-0.2
-0.3
-0.2
+0.5
stress
R2A with Thallium(I) acetate 0.001 mg/ml
-0.6
-0.2
-0.1
-0.1
+0.8
carbon source
Octanoic (C)
-0.3
-0.2
+0.1
-0.2
+0.5
carbon source
adipate (C)
+0.2
-0.3
-0.2
-0.2
+0.5
stress
R2A with Chlorite 4 mM
+0.5
-0.2
+0.2
-0.3
-0.1
stress
R2A with Nickel (II) chloride 0.25 mM
-0.2
-0.1
+0.3
-0.2
+0.5
carbon source
Dodecandioic (C)
+0.3
-0.0
+0.1
-0.2
+0.5
r2a
R2A
-0.3
+0.2
-0.1
-0.0
+1.0
carbon source
Carbon source D,L-Lactate 10 mM
+0.0
+0.2
-0.2
-0.0
+0.8
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
+0.6
-0.2
+0.3
-0.2
+0.4
carbon source
Azelaic (C)
+0.4
-0.1
-0.1
-0.0
+0.7
carbon source
Disodium Glutarate (C)
+0.5
-0.1
+0.1
-0.3
+0.8
stress
R2A with Nickel (II) chloride 0.25 mM
+0.4
-0.0
-0.1
+0.3
+0.5
stress
R2A with Lomefloxacin 0.00075 mM
-0.8
+0.0
+0.8
+0.2
+1.2
stress
R2A with Doxycycline hyclate 0.0001 mg/ml
+0.1
-0.1
+1.2
-0.0
+0.4
stress
R2A with Lomefloxacin 0.001 mM
-0.1
+0.4
+0.9
+0.4
+0.4
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RR42_RS16730
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