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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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5
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS16565 and RR42_RS16570 are separated by 47 nucleotides
RR42_RS16570 and RR42_RS16575 are separated by 77 nucleotides
RR42_RS16575 and RR42_RS16580 are separated by 120 nucleotides
RR42_RS16580 and RR42_RS16585 are separated by 571 nucleotides
RR42_RS16565: RR42_RS16565 - hypothetical protein, at 3,589,720 to 3,590,724
_RS16565
RR42_RS16570: RR42_RS16570 - 2-nitropropane dioxygenase, at 3,590,772 to 3,591,845
_RS16570
RR42_RS16575: RR42_RS16575 - acyl-CoA dehydrogenase, at 3,591,923 to 3,593,152
_RS16575
RR42_RS16580: RR42_RS16580 - hypothetical protein, at 3,593,273 to 3,594,247
_RS16580
RR42_RS16585: RR42_RS16585 - hypothetical protein, at 3,594,819 to 3,595,439
_RS16585
Group
Condition
RR42
_RS16565
RR42
_RS16570
RR42
_RS16575
RR42
_RS16580
RR42
_RS16585
stress
R2A with Nickel (II) chloride 0.35 mM
-0.1
-0.6
-0.9
-0.7
+0.2
stress
R2A with Paraquat dichloride 0.064 mg/ml
+0.4
-1.5
-0.2
-0.8
-0.1
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
-2.3
+0.0
-0.3
+0.5
+0.1
nitrogen source
L-Leucine (N)
-0.9
-0.5
+0.1
-0.4
+0.2
carbon source
Protocatechuic Acid (C)
+0.6
-0.8
-0.8
+0.1
-0.3
carbon source
4-Hydroxybenzoic Acid (C)
+0.3
-0.7
-0.5
-0.3
-0.0
carbon source
D-Lactate (C)
+0.4
-0.4
+0.1
-0.9
-0.2
stress
R2A with nitrate 200 mM
-0.3
-0.5
+0.3
-0.5
-0.1
stress
R2A with Cisplatin 0.001 mg/ml
-0.7
+0.6
-0.8
+0.2
-0.1
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
+0.2
-0.8
-0.2
+0.2
-0.3
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
-0.1
-0.7
-0.5
+0.1
+0.6
stress
R2A with Sisomicin 0.035 mg/ml
+0.3
-0.1
-0.3
-0.9
+0.3
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
-0.4
-0.3
-0.5
+0.6
+0.3
stress
R2A with Chlorite 4 mM
+0.1
-0.4
+0.6
-0.6
+0.1
carbon source
Octanoic (C)
+0.3
+0.5
-0.1
-0.4
-0.3
carbon source
Valeric (C)
+0.9
-0.4
-0.2
-0.0
+0.1
stress
R2A with Nickel (II) chloride 0.5 mM
-0.3
+0.3
+0.6
-0.4
+0.2
lb
LB
+0.2
-0.1
-0.5
+0.9
-0.0
carbon source
Azelaic (C)
+0.6
+0.3
-0.5
+0.4
-0.2
nitrogen source
L-Leucine (N)
+0.4
+0.5
+0.5
+0.3
-0.5
nitrogen source
L-Tryptophan (N)
+1.0
-0.2
+0.5
-0.0
+0.1
carbon source
L-Alanine (C)
+0.7
+0.1
+0.5
+0.4
-0.1
nitrogen source
L-Isoleucine (N)
+1.0
+0.6
-0.2
+0.2
-0.1
carbon source
L-Lactate (C)
+0.5
-0.1
+0.5
+0.6
+0.2
carbon source
L-Asparagine (C)
+0.8
+0.2
+0.6
+0.1
-0.0
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
+0.4
+0.2
+0.2
+0.8
+0.4
carbon source
pyruvate (C)
+0.6
+0.2
+0.6
+0.6
-0.1
carbon source
D-Lactate (C)
+0.6
+0.4
+0.7
+0.2
+0.1
carbon source
L-Leucine (C)
+0.6
+0.3
+0.7
+0.3
+0.1
nitrogen source
L-Asparagine (N)
+0.9
+0.4
+0.5
+0.6
+0.2
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