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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS16545 and RR42_RS16550 are separated by 283 nucleotides
RR42_RS16550 and RR42_RS16555 are separated by 166 nucleotides
RR42_RS16555 and RR42_RS16560 are separated by 211 nucleotides
RR42_RS16560 and RR42_RS16565 overlap by 4 nucleotides
RR42_RS16545: RR42_RS16545 - prolyl-tRNA synthetase, at 3,584,570 to 3,585,034
_RS16545
RR42_RS16550: RR42_RS16550 - hydroperoxidase, at 3,585,318 to 3,587,519
_RS16550
RR42_RS16555: RR42_RS16555 - cysteine hydrolase, at 3,587,686 to 3,588,300
_RS16555
RR42_RS16560: RR42_RS16560 - acyl-CoA transferase, at 3,588,512 to 3,589,723
_RS16560
RR42_RS16565: RR42_RS16565 - hypothetical protein, at 3,589,720 to 3,590,724
_RS16565
Group
Condition
RR42
_RS16545
RR42
_RS16550
RR42
_RS16555
RR42
_RS16560
RR42
_RS16565
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
+0.2
+0.2
-0.3
-0.0
-2.3
carbon source
Octanoic (C)
-0.5
-0.0
-0.9
-0.2
+0.3
nitrogen source
L-Leucine (N)
-0.1
-0.1
+0.3
-0.1
-0.9
carbon source
Azelaic (C)
-0.4
-0.1
-0.4
-0.1
+0.5
stress
R2A with nitrate 200 mM
+0.5
-0.1
-0.4
+0.0
-0.3
carbon source
L-Alanine (C)
-0.3
-0.1
-0.5
-0.1
+0.7
carbon source
Heptanoic (C)
+0.3
-0.1
-0.5
-0.4
+0.5
nitrogen source
L-Leucine (N)
-0.1
-0.0
-0.6
+0.3
+0.4
carbon source
Hexanoic (C)
+0.2
+0.0
-0.6
-0.1
+0.5
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
+0.4
-0.3
+0.4
+0.0
-0.4
stress
R2A with Paraquat dichloride 0.064 mg/ml
+0.7
-0.1
-0.9
+0.1
+0.4
stress
R2A with Thallium(I) acetate 0.001 mg/ml
+0.4
+0.1
+0.5
-0.2
-0.7
nitrogen source
L-Isoleucine (N)
-0.7
-0.2
+0.1
+0.1
+1.0
carbon source
adipate (C)
+0.5
-0.2
+0.5
+0.0
-0.3
stress
R2A with D-Cycloserine 0.5 mg/ml
+0.7
+0.1
-0.6
+0.1
+0.3
carbon source
L-Leucine (C)
-0.5
+0.2
+0.4
-0.0
+0.6
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
+1.2
-0.1
-0.1
-0.2
-0.1
carbon source
D-Lactate (C)
+0.6
+0.2
-0.3
-0.1
+0.4
nitrogen source
D-Alanine (N)
-0.1
+0.3
+0.6
-0.3
+0.3
carbon source
Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
+1.2
+0.0
-0.2
+0.2
-0.1
lb
LB
+1.3
-0.0
-0.3
+0.1
+0.2
nitrogen source
L-Tryptophan (N)
+0.2
+0.2
+0.2
-0.1
+1.0
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
+0.5
-0.2
+0.7
+0.1
+0.4
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
+1.1
+0.5
+0.2
+0.3
-0.4
carbon source
4-Hydroxybenzoic Acid (C)
+0.4
+0.2
+0.5
-0.0
+0.6
carbon source
L-Asparagine (C)
+0.4
+0.3
+0.2
+0.1
+0.8
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
+1.4
-0.3
+0.6
-0.1
+0.2
stress
R2A with Lomefloxacin 0.001 mM
+0.6
+0.2
+0.9
+0.4
+0.3
carbon source
Protocatechuic Acid (C)
+1.9
-0.3
+0.3
+0.2
+0.4
carbon source
Protocatechuic Acid (C)
+2.8
+0.0
+0.0
-0.0
+0.6
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