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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS16455 and RR42_RS16460 are separated by 663 nucleotides
RR42_RS16460 and RR42_RS16465 are separated by 38 nucleotides
RR42_RS16465 and RR42_RS16470 are separated by 141 nucleotides
RR42_RS16470 and RR42_RS16475 are separated by 221 nucleotides
RR42_RS16455: RR42_RS16455 - hypothetical protein, at 3,561,908 to 3,562,309
_RS16455
RR42_RS16460: RR42_RS16460 - cupin, at 3,562,973 to 3,563,476
_RS16460
RR42_RS16465: RR42_RS16465 - dTDP-glucose 4,6-dehydratase, at 3,563,515 to 3,564,252
_RS16465
RR42_RS16470: RR42_RS16470 - transcriptional regulator, at 3,564,394 to 3,565,926
_RS16470
RR42_RS16475: RR42_RS16475 - elongation factor G, at 3,566,148 to 3,568,196
_RS16475
Group
Condition
RR42
_RS16455
RR42
_RS16460
RR42
_RS16465
RR42
_RS16470
RR42
_RS16475
stress
R2A with Dimethyl Sulfoxide 5 vol%
+0.1
-1.8
-0.2
-0.2
-0.1
oxygen_nitrate
exometabolites; 10% oxygen; 5 mM nitrate
-0.5
-1.0
-0.2
+0.2
-0.1
nitrogen source
L-Phenylalanine (N)
+0.1
-1.4
-0.1
-0.1
+0.1
stress
R2A with Vancomycin 0.5 mg/ml
-0.3
-0.6
+0.1
-0.0
-0.5
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
-0.7
-0.7
+0.0
+0.2
+0.0
stress
R2A with Cisplatin 0.001 mg/ml
-0.5
-0.5
-0.3
+0.2
+0.1
nitrogen source
L-Tryptophan (N)
+0.1
-1.2
-0.1
+0.1
+0.1
carbon source
succinate (C)
-0.3
-0.6
+0.0
-0.2
+0.2
nitrogen source
L-Isoleucine (N)
+0.3
-0.4
-0.5
-0.1
-0.2
nitrogen source
nitrate (N)
+0.2
-1.4
-0.0
+0.2
+0.1
lb
LB
-0.9
-0.2
+0.3
+0.5
-0.1
carbon source
Dodecandioic (C)
+0.5
-1.6
+0.3
-0.0
+0.4
nitrogen source
L-Leucine (N)
-0.1
-1.1
+0.3
+0.3
+0.2
nitrogen source
L-Citrulline (N)
+0.3
-0.7
-0.2
+0.4
-0.0
nitrogen source
L-Glutamine (N)
-0.0
-0.6
-0.4
+0.1
+0.6
carbon source
Carbon source Phenylacetic 2.5 mM
+0.0
-1.1
+0.2
+0.3
+0.3
carbon source
Pimelic (C)
+0.5
-1.2
+0.2
+0.3
+0.1
nitrogen source
Glycine (N)
+0.4
-0.7
+0.2
-0.0
+0.2
carbon source
Carbon source D,L-Lactate 10 mM
+0.2
-0.6
+0.3
+0.2
+0.2
carbon source
Hexanoic (C)
+0.4
-0.2
+0.5
-0.3
-0.0
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
-0.3
+1.2
-0.1
+0.1
-0.5
stress
R2A with Nickel (II) chloride 0.5 mM
-0.3
+0.6
-0.1
+0.4
+0.0
carbon source
Carbon source Phenylacetic 2.5 mM
-0.1
-0.5
+0.5
+0.4
+0.4
carbon source
L-Histidine (C)
+0.3
+0.9
-0.0
-0.2
-0.1
nitrogen source
L-Serine (N)
+0.1
+0.9
+0.1
-0.3
+0.0
stress
R2A with D-Cycloserine 0.5 mg/ml
+0.1
+0.5
+0.5
+0.1
-0.2
carbon source
Dodecandioic (C)
+0.5
-0.1
+0.4
+0.3
-0.1
stress
R2A with Lomefloxacin 0.001 mM
+0.5
+0.7
-0.1
+0.3
-0.1
r2a
R2A
-0.2
+0.9
+0.5
+0.1
+0.2
carbon source
D-Gluconic Acid (C)
-0.1
+0.7
+0.2
+0.5
+0.2
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