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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS16430 and RR42_RS16435 are separated by 477 nucleotides
RR42_RS16435 and RR42_RS16440 are separated by 52 nucleotides
RR42_RS16440 and RR42_RS16445 are separated by 44 nucleotides
RR42_RS16445 and RR42_RS16450 are separated by 98 nucleotides
RR42_RS16430: RR42_RS16430 - transposase, at 3,556,697 to 3,557,038
_RS16430
RR42_RS16435: RR42_RS16435 - hypothetical protein, at 3,557,516 to 3,558,520
_RS16435
RR42_RS16440: RR42_RS16440 - dihydropyrimidinase, at 3,558,573 to 3,560,009
_RS16440
RR42_RS16445: RR42_RS16445 - hypothetical protein, at 3,560,054 to 3,560,812
_RS16445
RR42_RS16450: RR42_RS16450 - hypothetical protein, at 3,560,911 to 3,561,543
_RS16450
Group
Condition
RR42
_RS16430
RR42
_RS16435
RR42
_RS16440
RR42
_RS16445
RR42
_RS16450
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
-0.9
+0.1
-0.3
-0.2
-0.7
carbon source
Protocatechuic Acid (C)
-2.0
-0.4
+0.0
+0.3
+0.3
nitrogen source
L-Tryptophan (N)
-0.7
-0.1
-0.1
-0.2
-0.2
carbon source
Valeric (C)
-0.6
+0.3
+0.1
-0.7
-0.3
carbon source
Suberic (C)
-0.4
-0.2
+0.2
-0.6
-0.2
stress
R2A with D-Cycloserine 0.5 mg/ml
+0.0
-0.6
-0.2
-0.1
-0.3
stress
R2A with Nickel (II) chloride 0.5 mM
-0.1
-0.6
+0.0
-0.6
+0.1
nitrogen source
L-Threonine (N)
-0.9
+0.0
+0.1
-0.3
-0.1
stress
R2A with Cisplatin 0.001 mg/ml
-0.3
+0.1
+0.3
-0.4
-0.7
carbon source
Azelaic (C)
-0.5
+0.2
+0.0
-0.4
-0.0
stress
R2A with Nickel (II) chloride 0.35 mM
-0.5
+0.1
-0.1
+0.4
-0.5
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
+0.4
-0.5
-0.2
-0.5
+0.4
nitrogen source
L-Isoleucine (N)
-0.5
+0.1
+0.0
-0.3
+0.4
lb
LB
+0.6
+0.3
-0.6
-0.8
+0.5
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
-0.0
+0.5
-0.5
+0.4
-0.4
carbon source
L-Lactate (C)
+0.2
-0.3
+0.1
-0.4
+0.4
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
-0.2
+0.0
-0.4
+0.5
+0.2
oxygen_nitrate
exometabolites; 10% oxygen; 5 mM nitrate
+0.6
-0.1
+0.1
-0.7
+0.4
carbon source
L-Tryptophan (C)
+0.1
+0.2
+0.2
-0.4
+0.2
nitrogen source
D-Alanine (N)
-0.2
+0.4
+0.2
-0.1
+0.3
stress
R2A with Cobalt chloride 0.3 mM
+0.1
-0.2
+0.2
+0.4
+0.4
nitrogen source
L-Valine (N)
+0.3
-0.3
+0.1
+0.3
+0.4
carbon source
L-Lactate (C)
-0.1
+0.2
+0.3
+0.5
-0.1
nitrogen source
casaminos (N)
-0.2
+0.3
+0.4
+0.1
+0.4
nitrogen source
L-Tryptophan (N)
+0.4
-0.1
+0.3
+0.1
+0.4
stress
R2A with Lomefloxacin 0.00075 mM
+0.4
+0.2
+0.2
+0.4
-0.1
temperature
R2A 23C
+0.4
+0.3
+0.1
+0.4
+0.2
stress
R2A with Lomefloxacin 0.001 mM
+0.6
+0.3
+0.0
+0.4
+0.1
temperature
R2A 23C
+0.4
+0.6
-0.1
+0.3
+0.3
carbon source
L-Asparagine (C)
+0.5
+0.3
+0.5
+0.3
+0.4
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