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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS16365 and RR42_RS16370 are separated by 29 nucleotides
RR42_RS16370 and RR42_RS16375 are separated by 19 nucleotides
RR42_RS16375 and RR42_RS16380 are separated by 40 nucleotides
RR42_RS16380 and RR42_RS16385 are separated by 9 nucleotides
RR42_RS16365: RR42_RS16365 - 3-oxoacyl-ACP reductase, at 3,544,573 to 3,545,358
_RS16365
RR42_RS16370: RR42_RS16370 - glutamine ABC transporter ATP-binding protein, at 3,545,388 to 3,546,170
_RS16370
RR42_RS16375: RR42_RS16375 - short-chain dehydrogenase, at 3,546,190 to 3,546,963
_RS16375
RR42_RS16380: RR42_RS16380 - hypothetical protein, at 3,547,004 to 3,547,963
_RS16380
RR42_RS16385: RR42_RS16385 - polar amino acid ABC transporter permease, at 3,547,973 to 3,548,644
_RS16385
Group
Condition
RR42
_RS16365
RR42
_RS16370
RR42
_RS16375
RR42
_RS16380
RR42
_RS16385
carbon source
Protocatechuic Acid (C)
-0.1
-0.4
-0.5
-0.3
-0.1
stress
R2A with Paraquat dichloride 0.064 mg/ml
+0.3
+0.0
-0.2
-0.4
-0.7
stress
R2A with Vancomycin 0.5 mg/ml
+0.2
-1.2
-0.1
-0.1
+0.3
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
+0.1
+0.3
-0.6
-0.6
-0.1
nitrogen source
L-Phenylalanine (N)
+0.2
-0.4
+0.3
-0.2
+0.0
stress
R2A with Nickel (II) chloride 0.35 mM
+0.0
-0.7
+0.1
+0.0
+0.4
carbon source
4-Hydroxybenzoic Acid (C)
-0.0
+0.4
-0.4
-0.3
+0.5
carbon source
Octanoic (C)
-0.3
+0.3
+0.3
+0.1
-0.2
carbon source
Carbon source Phenylacetic 2.5 mM
-0.3
+0.4
-0.1
+0.2
+0.2
stress
R2A with Cisplatin 0.001 mg/ml
-0.2
+0.1
+0.5
+0.3
-0.3
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
+0.1
+0.9
-0.5
-0.1
-0.0
lb
LB
+0.3
+0.6
+0.1
-0.5
-0.0
carbon source
Trisodium citrate (C)
+0.2
+0.2
+0.4
+0.2
-0.4
carbon source
Disodium Glutarate (C)
-0.3
+0.3
+0.1
+0.3
+0.2
carbon source
Protocatechuic Acid (C)
+0.2
+0.4
+0.5
+0.1
-0.6
carbon source
adipate (C)
-0.2
+0.6
+0.3
+0.1
-0.2
carbon source
Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
+0.0
+0.8
-0.0
+0.2
-0.3
nitrogen source
L-Serine (N)
+0.4
-0.2
+0.5
+0.2
-0.0
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
+0.1
+0.7
-0.2
+0.1
+0.2
nitrogen source
L-Leucine (N)
+0.2
+0.4
+0.2
+0.3
-0.2
carbon source
adipate (C)
-0.3
+0.5
+0.5
+0.1
+0.3
carbon source
Dodecandioic (C)
-0.1
+0.4
+0.5
+0.4
-0.0
stress
R2A with Lomefloxacin 0.001 mM
-0.1
+0.0
+0.7
+0.3
+0.2
carbon source
succinate (C)
-0.1
+0.7
+0.3
+0.2
+0.1
carbon source
L-Asparagine (C)
+0.0
+0.0
+0.5
+0.3
+0.3
carbon source
succinate (C)
-0.0
+0.2
+0.5
+0.3
+0.3
carbon source
Disodium Glutarate (C)
-0.1
+0.6
+0.5
+0.4
-0.0
stress
R2A with nitrate 200 mM
+0.2
+0.1
+0.4
+0.4
+0.3
stress
R2A with Lomefloxacin 0.00075 mM
+0.2
+0.1
+0.6
+0.0
+0.5
carbon source
L-Histidine (C)
+0.1
+0.6
+0.6
+0.3
-0.0
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