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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS16285 and RR42_RS16290 are separated by 325 nucleotides
RR42_RS16290 and RR42_RS16295 are separated by 61 nucleotides
RR42_RS16295 and RR42_RS16300 are separated by 41 nucleotides
RR42_RS16300 and RR42_RS16305 are separated by 14 nucleotides
RR42_RS16285: RR42_RS16285 - methylase, at 3,525,047 to 3,526,198
_RS16285
RR42_RS16290: RR42_RS16290 - hypothetical protein, at 3,526,524 to 3,527,366
_RS16290
RR42_RS16295: RR42_RS16295 - hypothetical protein, at 3,527,428 to 3,527,709
_RS16295
RR42_RS16300: RR42_RS16300 - hypothetical protein, at 3,527,751 to 3,528,998
_RS16300
RR42_RS16305: RR42_RS16305 - hypothetical protein, at 3,529,013 to 3,529,534
_RS16305
Group
Condition
RR42
_RS16285
RR42
_RS16290
RR42
_RS16295
RR42
_RS16300
RR42
_RS16305
carbon source
Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
-0.4
-0.3
N.D.
-0.2
-0.8
stress
R2A with Nickel (II) chloride 0.35 mM
-0.1
+0.1
N.D.
+0.3
-1.9
oxygen_nitrate
exometabolites; 10% oxygen; 5 mM nitrate
-0.2
-0.5
N.D.
-0.3
-0.4
lb
LB
-0.4
+0.0
N.D.
+0.1
-1.2
carbon source
L-Histidine (C)
-0.5
-0.3
N.D.
+0.0
-0.5
stress
R2A with Cobalt chloride 0.3 mM
-0.5
-0.1
N.D.
-0.0
-0.6
stress
R2A with D-Cycloserine 0.5 mg/ml
-0.5
-0.5
N.D.
+0.1
-0.4
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
-0.3
+0.3
N.D.
-0.0
-1.0
oxygen_nitrate
exometabolites; 10% oxygen; 5 mM nitrate
-0.3
+0.1
N.D.
-0.1
-0.6
carbon source
Disodium Glutarate (C)
+0.4
-0.4
N.D.
-0.3
-0.5
carbon source
Carbon source D,L-Lactate 10 mM
-0.6
+0.3
N.D.
-0.1
-0.3
carbon source
Carbon source Phenylacetic 2.5 mM
-0.1
+0.2
N.D.
-0.2
-0.7
stress
R2A with Doxycycline hyclate 0.0001 mg/ml
-0.6
+0.0
N.D.
-0.3
+0.3
carbon source
Azelaic (C)
+0.4
-0.2
N.D.
+0.1
-0.8
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
+0.4
-0.4
N.D.
-0.3
-0.1
carbon source
L-Asparagine (C)
+0.0
+0.2
N.D.
+0.2
-0.7
nitrogen source
nitrate (N)
+0.3
-0.0
N.D.
+0.1
-0.6
stress
R2A with Cisplatin 0.001 mg/ml
-0.7
+0.4
N.D.
+0.1
-0.0
stress
R2A with Paraquat dichloride 0.064 mg/ml
-0.4
+0.5
N.D.
+0.1
-0.1
nitrogen source
L-Valine (N)
-0.1
+0.4
N.D.
+0.3
-0.4
stress
R2A with Nickel (II) chloride 0.5 mM
-0.5
+0.4
N.D.
+0.0
+0.4
nitrogen source
L-Tryptophan (N)
+0.3
+0.4
N.D.
+0.1
-0.4
carbon source
D,L-Lactate (C)
-0.3
+0.2
N.D.
+0.3
+0.3
carbon source
Hexanoic (C)
+0.3
-0.4
N.D.
+0.2
+0.4
nitrogen source
L-Glutamine (N)
+0.6
+0.1
N.D.
-0.3
+0.1
stress
R2A with Cobalt chloride 0.5 mM
+0.3
+0.2
N.D.
+0.4
-0.1
carbon source
D,L-Lactate (C)
+0.1
+0.4
N.D.
+0.4
+0.2
carbon source
succinate (C)
+0.4
+0.0
N.D.
+0.1
+0.5
carbon source
Disodium Glutarate (C)
+0.5
+0.1
N.D.
+0.1
+0.5
carbon source
Dodecandioic (C)
+0.6
-0.2
N.D.
+0.3
+0.7
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