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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS16275 and RR42_RS16280 are separated by 156 nucleotides
RR42_RS16280 and RR42_RS16285 are separated by 193 nucleotides
RR42_RS16285 and RR42_RS16290 are separated by 325 nucleotides
RR42_RS16290 and RR42_RS16295 are separated by 61 nucleotides
RR42_RS16275: RR42_RS16275 - membrane protein, at 3,522,982 to 3,523,755
_RS16275
RR42_RS16280: RR42_RS16280 - transcriptional regulator, at 3,523,912 to 3,524,853
_RS16280
RR42_RS16285: RR42_RS16285 - methylase, at 3,525,047 to 3,526,198
_RS16285
RR42_RS16290: RR42_RS16290 - hypothetical protein, at 3,526,524 to 3,527,366
_RS16290
RR42_RS16295: RR42_RS16295 - hypothetical protein, at 3,527,428 to 3,527,709
_RS16295
Group
Condition
RR42
_RS16275
RR42
_RS16280
RR42
_RS16285
RR42
_RS16290
RR42
_RS16295
nitrogen source
nitrite (N)
-4.6
-6.4
+0.2
+0.1
N.D.
nitrogen source
L-Asparagine (N)
-4.4
-5.7
+0.1
-0.3
N.D.
carbon source
Azelaic (C)
-5.5
-4.8
+0.2
-0.2
N.D.
nitrogen source
D-Alanine (N)
-5.6
-4.4
-0.1
+0.1
N.D.
carbon source
Suberic (C)
-5.2
-5.6
+0.7
+0.1
N.D.
carbon source
L-Glutamine (C)
-5.1
-4.7
-0.1
+0.1
N.D.
carbon source
Heptanoic (C)
-5.4
-4.0
+0.3
-0.6
N.D.
carbon source
Hexanoic (C)
-5.4
-4.5
+0.6
-0.3
N.D.
carbon source
a-Ketoglutaric (C)
-5.6
-3.8
+0.0
-0.1
N.D.
nitrogen source
L-Threonine (N)
-4.1
-4.8
-0.6
+0.1
N.D.
carbon source
Octanoic (C)
-5.3
-4.6
+0.4
+0.2
N.D.
carbon source
Dodecandioic (C)
-5.3
-4.4
+0.6
-0.2
N.D.
carbon source
succinate (C)
-5.2
-3.8
-0.0
-0.2
N.D.
carbon source
Pimelic (C)
-5.5
-3.9
+0.3
-0.1
N.D.
nitrogen source
L-Glutamine (N)
-4.1
-5.7
+0.6
+0.1
N.D.
nitrogen source
L-Tryptophan (N)
-5.6
-3.6
-0.1
+0.2
N.D.
carbon source
L-Lactate (C)
-5.0
-4.4
-0.0
+0.3
N.D.
carbon source
Heptanoic (C)
-5.2
-3.6
+0.2
-0.4
N.D.
carbon source
4-Hydroxybenzoic Acid (C)
-5.6
-3.7
+0.1
+0.3
N.D.
carbon source
Octanoic (C)
-5.5
-3.8
+0.2
+0.2
N.D.
carbon source
L-Proline (C)
-5.8
-3.3
+0.2
+0.1
N.D.
carbon source
Valeric (C)
-5.2
-3.3
+0.3
-0.5
N.D.
carbon source
D-Fructose (C)
-5.7
-3.2
-0.1
+0.3
N.D.
carbon source
D,L-Lactate (C)
-5.5
-3.6
+0.1
+0.4
N.D.
nitrogen source
L-Valine (N)
-5.5
-3.5
-0.1
+0.4
N.D.
carbon source
adipate (C)
-4.8
-4.0
+0.4
-0.1
N.D.
carbon source
Ethanol (C)
-5.6
-3.4
+0.2
+0.3
N.D.
carbon source
Disodium Glutarate (C)
-5.4
-3.1
+0.4
-0.4
N.D.
carbon source
L-Leucine (C)
-5.2
-3.7
+0.3
+0.2
N.D.
nitrogen source
L-Tryptophan (N)
-5.1
-3.6
+0.3
+0.4
N.D.
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