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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS16165 and RR42_RS16170 are separated by 129 nucleotides
RR42_RS16170 and RR42_RS16175 are separated by 98 nucleotides
RR42_RS16175 and RR42_RS16180 are separated by 61 nucleotides
RR42_RS16180 and RR42_RS16185 are separated by 114 nucleotides
RR42_RS16165: RR42_RS16165 - periplasmic or secreted protein, at 3,499,387 to 3,500,088
_RS16165
RR42_RS16170: RR42_RS16170 - malonyl-CoA synthase, at 3,500,218 to 3,501,771
_RS16170
RR42_RS16175: RR42_RS16175 - enoyl-CoA hydratase, at 3,501,870 to 3,502,652
_RS16175
RR42_RS16180: RR42_RS16180 - ABC transporter substrate-binding protein, at 3,502,714 to 3,503,700
_RS16180
RR42_RS16185: RR42_RS16185 - malonyl-CoA decarboxylase, at 3,503,815 to 3,505,263
_RS16185
Group
Condition
RR42
_RS16165
RR42
_RS16170
RR42
_RS16175
RR42
_RS16180
RR42
_RS16185
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
-0.1
-0.0
-3.4
-0.5
-0.1
stress
R2A with Zinc 0.1 mM
+0.0
-0.2
-1.8
-0.2
-0.1
oxygen_nitrate
exometabolites; 10% oxygen; 5 mM nitrate
-0.1
+0.1
-1.3
-0.1
-0.4
carbon source
L-Asparagine (C)
+0.1
-0.4
-0.8
-0.4
-0.1
carbon source
D,L-Lactate (C)
-0.1
-0.1
-0.7
-0.1
-0.4
stress
R2A with A22 0.01 mg/ml
+0.0
-0.1
-0.7
-0.2
-0.4
oxygen_nitrate
exometabolites; 10% oxygen; 5 mM nitrate
-0.0
+0.1
-1.0
-0.1
-0.2
carbon source
L-Malic (C)
-0.0
-0.2
-0.8
-0.1
+0.2
carbon source
Protocatechuic Acid (C)
+0.3
+0.5
-1.9
-0.1
+0.3
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
+0.2
+0.1
-1.6
+0.2
+0.5
lb
LB
-0.1
+0.1
-0.4
-0.4
+0.4
stress
R2A with Paraquat dichloride 0.064 mg/ml
+0.1
-0.1
-0.5
-0.2
+0.5
carbon source
Azelaic (C)
+0.1
-0.0
-0.8
-0.2
+0.8
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
-0.3
-0.1
-0.1
-0.3
+0.7
carbon source
L-Histidine (C)
+0.2
-0.1
-0.5
-0.2
+0.4
carbon source
Pimelic (C)
+0.0
+0.1
-0.6
+0.2
+0.4
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
+0.0
-0.4
+0.6
-0.2
+0.2
stress
R2A with nitrate 200 mM
+0.1
-0.1
+0.6
-0.4
+0.1
stress
R2A with Nickel (II) chloride 0.25 mM
-0.3
-0.0
+0.8
-0.2
+0.3
stress
R2A with nitrate 200 mM
+0.1
-0.0
+0.6
-0.3
+0.6
stress
R2A with Dimethyl Sulfoxide 5 vol%
-0.1
+0.1
+0.5
+0.4
+0.3
carbon source
propionate (C)
-0.2
-0.0
+0.7
+0.3
+0.5
carbon source
Hexanoic (C)
+0.1
+0.1
+0.8
-0.0
+0.3
carbon source
4-Hydroxybenzoic Acid (C)
-0.1
-0.2
+0.8
-0.0
+0.8
nitrogen source
L-Asparagine (N)
-0.0
+0.0
+0.9
+0.1
+0.3
carbon source
L-Alanine (C)
-0.1
+0.1
+0.6
+0.1
+0.6
stress
R2A with sodium fluoride 100 mM
-0.2
-0.0
+1.3
-0.0
+0.3
nitrogen source
L-Valine (N)
+0.1
+0.1
+0.4
+0.1
+0.7
carbon source
D-Fructose (C)
+0.1
+0.1
+1.0
-0.1
+0.5
carbon source
Suberic (C)
+0.1
+0.2
+0.9
+0.1
+0.4
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