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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS16045 and RR42_RS16050 are separated by 46 nucleotides
RR42_RS16050 and RR42_RS16055 are separated by 138 nucleotides
RR42_RS16055 and RR42_RS16060 are separated by 502 nucleotides
RR42_RS16060 and RR42_RS16065 are separated by 224 nucleotides
RR42_RS16045: RR42_RS16045 - hypothetical protein, at 3,476,538 to 3,476,726
_RS16045
RR42_RS16050: RR42_RS16050 - segregation and condensation protein A, at 3,476,773 to 3,477,654
_RS16050
RR42_RS16055: RR42_RS16055 - pantothenate synthetase, at 3,477,793 to 3,478,641
_RS16055
RR42_RS16060: RR42_RS16060 - membrane protein, at 3,479,144 to 3,480,319
_RS16060
RR42_RS16065: RR42_RS16065 - GNAT family acetyltransferase, at 3,480,544 to 3,481,125
_RS16065
Group
Condition
RR42
_RS16045
RR42
_RS16050
RR42
_RS16055
RR42
_RS16060
RR42
_RS16065
stress
R2A with Lomefloxacin 0.00075 mM
N.D.
N.D.
N.D.
-0.8
+0.0
temperature
R2A 23C
N.D.
N.D.
N.D.
-0.2
-0.5
carbon source
Azelaic (C)
N.D.
N.D.
N.D.
-0.4
-0.2
stress
R2A with Cobalt chloride 0.3 mM
N.D.
N.D.
N.D.
-0.6
+0.0
stress
R2A with Lomefloxacin 0.001 mM
N.D.
N.D.
N.D.
-0.4
-0.1
stress
R2A with Bacitracin 0.5 mg/ml
N.D.
N.D.
N.D.
-0.2
-0.2
stress
R2A with Polymyxin B sulfate 0.005 mg/ml
N.D.
N.D.
N.D.
-0.5
+0.1
carbon source
Valeric (C)
N.D.
N.D.
N.D.
-0.3
-0.2
carbon source
L-Glutamine (C)
N.D.
N.D.
N.D.
-0.4
-0.0
oxygen_nitrate
exometabolites; 10% oxygen; 5 mM nitrate
N.D.
N.D.
N.D.
-0.2
-0.2
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
N.D.
N.D.
N.D.
+0.2
-0.5
carbon source
Azelaic (C)
N.D.
N.D.
N.D.
-0.4
+0.2
oxygen_nitrate
exometabolites; 10% oxygen; 5 mM nitrate
N.D.
N.D.
N.D.
-0.3
+0.1
carbon source
D,L-Lactate (C)
N.D.
N.D.
N.D.
-0.3
+0.2
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
N.D.
N.D.
N.D.
+0.3
-0.4
carbon source
adipate (C)
N.D.
N.D.
N.D.
-0.2
+0.2
stress
R2A with Paraquat dichloride 0.064 mg/ml
N.D.
N.D.
N.D.
-0.2
+0.3
stress
R2A with Nickel (II) chloride 0.25 mM
N.D.
N.D.
N.D.
+0.3
-0.2
carbon source
L-Histidine (C)
N.D.
N.D.
N.D.
-0.2
+0.4
stress
R2A with Nickel (II) chloride 0.5 mM
N.D.
N.D.
N.D.
-0.3
+0.5
carbon source
L-Asparagine (C)
N.D.
N.D.
N.D.
-0.2
+0.4
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
N.D.
N.D.
N.D.
+0.4
-0.1
carbon source
L-Threonine (C)
N.D.
N.D.
N.D.
-0.1
+0.4
carbon source
4-Hydroxybenzoic Acid (C)
N.D.
N.D.
N.D.
-0.1
+0.5
carbon source
pyruvate (C)
N.D.
N.D.
N.D.
+0.1
+0.4
lb
LB
N.D.
N.D.
N.D.
+0.1
+0.3
stress
R2A with Thallium(I) acetate 0.001 mg/ml
N.D.
N.D.
N.D.
+0.1
+0.4
carbon source
Ethanol (C)
N.D.
N.D.
N.D.
+0.2
+0.3
stress
R2A with Cobalt chloride 0.5 mM
N.D.
N.D.
N.D.
+0.1
+0.5
stress
R2A with Vancomycin 0.5 mg/ml
N.D.
N.D.
N.D.
+0.3
+0.6
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