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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS15945 and RR42_RS15950 are separated by 192 nucleotides
RR42_RS15950 and RR42_RS15955 are separated by 69 nucleotides
RR42_RS15955 and RR42_RS15960 are separated by 13 nucleotides
RR42_RS15960 and RR42_RS15965 are separated by 36 nucleotides
RR42_RS15945: RR42_RS15945 - deoxycytidine triphosphate deaminase, at 3,450,700 to 3,451,266
_RS15945
RR42_RS15950: RR42_RS15950 - formate dehydrogenase, at 3,451,459 to 3,452,289
_RS15950
RR42_RS15955: RR42_RS15955 - superoxide dismutase, at 3,452,359 to 3,452,898
_RS15955
RR42_RS15960: RR42_RS15960 - hypothetical protein, at 3,452,912 to 3,453,313
_RS15960
RR42_RS15965: RR42_RS15965 - formate dehydrogenase, at 3,453,350 to 3,454,561
_RS15965
Group
Condition
RR42
_RS15945
RR42
_RS15950
RR42
_RS15955
RR42
_RS15960
RR42
_RS15965
nitrogen source
L-Glutamine (N)
N.D.
-0.5
-0.5
-0.7
-0.3
carbon source
Valeric (C)
N.D.
-0.3
-0.5
-0.9
-0.2
carbon source
Dodecandioic (C)
N.D.
-0.1
-0.6
-0.7
-0.2
nitrogen source
casaminos (N)
N.D.
-0.4
-0.5
-0.3
-0.3
carbon source
adipate (C)
N.D.
-0.0
-0.4
-0.7
-0.2
carbon source
L-Leucine (C)
N.D.
+0.0
-0.8
-0.6
+0.0
nitrogen source
L-Serine (N)
N.D.
-0.5
-0.1
-0.4
-0.3
stress
R2A with Lomefloxacin 0.001 mM
N.D.
-0.1
+0.1
-1.5
+0.2
r2a
R2A
N.D.
-0.2
-0.0
-0.6
-0.4
nitrogen source
D-Alanine (N)
N.D.
-0.1
-0.4
-0.6
-0.2
carbon source
Pimelic (C)
N.D.
-0.2
-0.2
-0.5
-0.2
carbon source
D,L-Lactate (C)
N.D.
-0.4
-0.3
-0.2
-0.2
carbon source
succinate (C)
N.D.
-0.1
-0.6
-0.5
+0.0
carbon source
Protocatechuic Acid (C)
N.D.
-0.1
+0.5
-1.2
-0.1
nitrogen source
Glucuronamide (N)
N.D.
-0.3
+0.3
-0.2
-0.5
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
N.D.
+0.6
-0.1
-1.0
+0.1
stress
R2A with Cisplatin 0.001 mg/ml
N.D.
+0.4
+0.0
-0.9
+0.1
carbon source
Carbon source D,L-Lactate 10 mM
N.D.
+0.2
-0.7
+0.2
-0.1
carbon source
Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
N.D.
+0.4
+0.3
-0.6
-0.1
stress
R2A with Paraquat dichloride 0.064 mg/ml
N.D.
+0.2
+0.4
-0.7
+0.0
stress
R2A with copper (II) chloride 0.25 mM
N.D.
+0.3
+0.4
-0.5
+0.1
stress
R2A with Cobalt chloride 0.5 mM
N.D.
+0.1
-0.3
+0.6
-0.1
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
N.D.
+0.1
+0.8
-0.6
+0.1
stress
R2A with Chlorite 4 mM
N.D.
+0.4
+0.4
-0.3
-0.0
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
N.D.
-0.0
+0.9
+0.3
-0.2
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
N.D.
+0.6
+0.6
-0.5
+0.3
carbon source
propionate (C)
N.D.
+0.1
+0.4
+0.5
+0.1
carbon source
L-Histidine (C)
N.D.
+0.3
+0.5
+0.2
+0.1
stress
R2A with nitrate 200 mM
N.D.
+0.2
+0.1
+0.6
+0.3
stress
R2A with Nickel (II) chloride 0.5 mM
N.D.
+0.2
+0.6
+0.4
+0.3
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RR42_RS15955
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