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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS15875 and RR42_RS15880 are separated by 137 nucleotides
RR42_RS15880 and RR42_RS15885 are separated by 184 nucleotides
RR42_RS15885 and RR42_RS15890 are separated by 365 nucleotides
RR42_RS15890 and RR42_RS15895 are separated by 3 nucleotides
RR42_RS15875: RR42_RS15875 - hypothetical protein, at 3,430,852 to 3,431,424
_RS15875
RR42_RS15880: RR42_RS15880 - pseudouridine synthase, at 3,431,562 to 3,432,275
_RS15880
RR42_RS15885: RR42_RS15885 - deoxyribodipyrimidine photolyase, at 3,432,460 to 3,434,010
_RS15885
RR42_RS15890: RR42_RS15890 - heme biosynthesis protein HemY, at 3,434,376 to 3,435,566
_RS15890
RR42_RS15895: RR42_RS15895 - uroporphyrinogen III methyltransferase, at 3,435,570 to 3,437,732
_RS15895
Group
Condition
RR42
_RS15875
RR42
_RS15880
RR42
_RS15885
RR42
_RS15890
RR42
_RS15895
nitrogen source
L-Leucine (N)
-0.3
-0.2
+0.2
-5.7
-4.2
nitrogen source
nitrate (N)
-0.5
-0.1
-0.1
-4.8
-2.8
carbon source
Heptanoic (C)
-0.1
-0.2
+0.1
-4.3
-3.7
nitrogen source
L-Leucine (N)
-0.2
+0.1
-0.1
-4.6
-3.3
nitrogen source
L-Tryptophan (N)
-0.4
-0.1
-0.2
-4.3
-3.1
nitrogen source
L-Valine (N)
-0.4
+0.1
+0.1
-4.9
-3.0
nitrogen source
L-Lysine (N)
+0.1
+0.2
+0.0
-4.9
-3.3
nitrogen source
L-Tryptophan (N)
-0.1
-0.2
+0.1
-4.5
-3.2
carbon source
Heptanoic (C)
+0.4
-0.2
-0.0
-4.5
-3.2
stress
R2A with Lomefloxacin 0.00075 mM
-0.9
-0.5
-0.4
-2.9
-2.8
stress
R2A with Nickel (II) chloride 0.5 mM
-0.1
+0.6
+0.8
-5.8
-3.0
stress
R2A with Cobalt chloride 0.5 mM
+0.1
-0.5
-0.2
-3.5
-3.3
nitrogen source
nitrite (N)
+0.5
-0.1
-0.0
-4.4
-3.3
nitrogen source
L-Serine (N)
-0.9
-0.5
-0.7
-2.7
-2.3
carbon source
D-Gluconic Acid (C)
-0.1
+0.3
+0.2
-4.7
-2.7
stress
R2A with nitrate 200 mM
-0.1
+0.2
-0.2
-4.0
-2.8
carbon source
D-Fructose (C)
-0.3
+0.0
+0.1
-3.5
-3.1
nitrogen source
L-Citrulline (N)
-0.1
-0.5
+0.0
-3.6
-2.5
stress
R2A with Nickel (II) chloride 0.35 mM
+0.6
+0.3
+0.0
-4.1
-3.3
nitrogen source
D-Alanine (N)
+0.3
+0.1
+0.1
-4.0
-2.8
carbon source
succinate (C)
-0.3
+0.0
+0.2
-3.5
-2.6
nitrogen source
L-Isoleucine (N)
-0.9
-0.1
-0.1
-2.5
-2.5
carbon source
succinate (C)
+0.0
+0.2
-0.1
-3.4
-2.7
carbon source
L-Malic (C)
+0.1
-0.1
+0.0
-2.8
-3.2
stress
R2A with Nickel (II) chloride 0.35 mM
+0.4
+0.5
+0.4
-4.5
-2.5
carbon source
Octanoic (C)
+0.3
+0.0
+0.0
-2.4
-3.5
stress
R2A with Doxycycline hyclate 0.0001 mg/ml
-0.2
+0.4
+0.2
-2.8
-3.2
carbon source
Octanoic (C)
+0.3
+0.0
+0.2
-2.9
-2.9
carbon source
D-Lactate (C)
+0.0
+0.4
+0.0
-3.2
-2.4
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
+1.1
-0.4
-0.4
-2.5
-1.8
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