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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS15785 and RR42_RS15790 are separated by 5 nucleotides
RR42_RS15790 and RR42_RS15795 are separated by 5 nucleotides
RR42_RS15795 and RR42_RS15800 overlap by 4 nucleotides
RR42_RS15800 and RR42_RS15805 overlap by 4 nucleotides
RR42_RS15785: RR42_RS15785 - glycosyl transferase family 28, at 3,411,601 to 3,412,686
_RS15785
RR42_RS15790: RR42_RS15790 - aminotransferase class III, at 3,412,692 to 3,413,981
_RS15790
RR42_RS15795: RR42_RS15795 - spore coat protein, at 3,413,987 to 3,414,757
_RS15795
RR42_RS15800: RR42_RS15800 - aldo/keto reductase, at 3,414,754 to 3,415,650
_RS15800
RR42_RS15805: RR42_RS15805 - spore coat protein, at 3,415,647 to 3,416,795
_RS15805
Group
Condition
RR42
_RS15785
RR42
_RS15790
RR42
_RS15795
RR42
_RS15800
RR42
_RS15805
stress
R2A with Polymyxin B sulfate 0.005 mg/ml
-3.3
-4.3
-3.4
-4.0
N.D.
stress
R2A with Thallium(I) acetate 0.001 mg/ml
-4.1
-3.6
-5.0
-2.2
N.D.
stress
R2A with Cobalt chloride 0.5 mM
-2.4
-3.4
-3.9
-5.2
N.D.
stress
R2A with Cobalt chloride 0.3 mM
-2.6
-2.6
-3.9
-3.9
N.D.
stress
R2A with Nickel (II) chloride 0.25 mM
-1.8
-3.5
-3.0
-3.7
N.D.
stress
R2A with Nickel (II) chloride 0.5 mM
-3.1
-3.1
-2.3
-3.3
N.D.
stress
R2A with copper (II) chloride 0.25 mM
-2.9
-2.7
-3.0
-3.0
N.D.
stress
R2A with Nickel (II) chloride 0.25 mM
-1.5
-2.5
-4.2
-3.2
N.D.
stress
R2A with Sisomicin 0.035 mg/ml
-2.8
-2.4
-2.8
-2.5
N.D.
stress
R2A with Doxycycline hyclate 0.0001 mg/ml
-1.2
-2.3
-3.6
-1.6
N.D.
stress
R2A with nitrate 150 mM
-1.6
-2.2
-2.4
-2.3
N.D.
stress
R2A with Paraquat dichloride 0.064 mg/ml
-1.8
-1.8
-2.6
-2.0
N.D.
nitrogen source
Glycine (N)
-3.0
-2.3
-1.3
-1.5
N.D.
stress
R2A with Vancomycin 0.5 mg/ml
-1.8
-2.3
-1.9
-2.1
N.D.
stress
R2A with Nickel (II) chloride 0.35 mM
-1.4
-2.1
-2.2
-1.7
N.D.
stress
R2A with Nickel (II) chloride 0.35 mM
-1.1
-2.2
-1.3
-1.6
N.D.
stress
R2A with Vancomycin 0.5 mg/ml
-0.7
-1.2
-1.7
-2.1
N.D.
stress
R2A with nitrate 200 mM
-1.6
-1.0
-1.6
-1.4
N.D.
carbon source
Heptanoic (C)
-1.6
-1.1
-2.2
-0.7
N.D.
stress
R2A with Dimethyl Sulfoxide 5 vol%
-0.7
-0.6
-2.6
-1.4
N.D.
stress
R2A with nitrate 200 mM
-1.6
-1.4
-1.4
-0.1
N.D.
carbon source
L-Asparagine (C)
-1.0
-1.0
-1.6
-0.7
N.D.
carbon source
Heptanoic (C)
-1.3
-0.8
-1.4
-0.9
N.D.
lb
LB
+1.6
-1.3
-1.5
-3.1
N.D.
stress
R2A with Chloride 300 mM
-1.6
-1.4
-0.7
-0.3
N.D.
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
+1.0
+1.0
+2.1
+1.0
N.D.
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
+1.2
+0.7
+2.3
+1.5
N.D.
carbon source
Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
+1.8
+1.9
+0.5
+1.8
N.D.
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
+2.9
+2.2
+2.5
+1.4
N.D.
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
+3.2
+2.7
+2.3
+2.6
N.D.
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