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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS15705 and RR42_RS15710 overlap by 1 nucleotides
RR42_RS15710 and RR42_RS15715 overlap by 4 nucleotides
RR42_RS15715 and RR42_RS15720 are separated by 133 nucleotides
RR42_RS15720 and RR42_RS15725 are separated by 1461 nucleotides
RR42_RS15705: RR42_RS15705 - glycosyl transferase family 1, at 3,393,868 to 3,394,992
_RS15705
RR42_RS15710: RR42_RS15710 - LPS biosynthesis protein, at 3,394,992 to 3,396,242
_RS15710
RR42_RS15715: RR42_RS15715 - glycosyl transferase, at 3,396,239 to 3,397,315
_RS15715
RR42_RS15720: RR42_RS15720 - hypothetical protein, at 3,397,449 to 3,398,375
_RS15720
RR42_RS15725: RR42_RS15725 - hypothetical protein, at 3,399,837 to 3,400,478
_RS15725
Group
Condition
RR42
_RS15705
RR42
_RS15710
RR42
_RS15715
RR42
_RS15720
RR42
_RS15725
nitrogen source
Glycine (N)
-1.1
-1.5
-0.9
-4.8
+0.1
stress
R2A with Nickel (II) chloride 0.5 mM
-2.0
-3.1
-1.4
-1.0
-0.0
stress
R2A with Thallium(I) acetate 0.001 mg/ml
-2.3
-3.4
-1.3
-0.3
-0.0
stress
R2A with copper (II) chloride 0.25 mM
-1.6
-1.9
-0.8
-1.7
-0.2
stress
R2A with Polymyxin B sulfate 0.005 mg/ml
-1.4
-2.5
-1.4
-1.0
+0.4
stress
R2A with nitrate 150 mM
-0.6
-2.2
-1.2
-2.0
+0.0
stress
R2A with nitrate 200 mM
-0.8
-1.4
-1.0
-2.3
+0.1
stress
R2A with Cobalt chloride 0.5 mM
-1.6
-3.2
-0.2
-0.1
+0.6
stress
R2A with Nickel (II) chloride 0.25 mM
-1.2
-1.5
-0.7
-1.1
+0.3
stress
R2A with nitrate 200 mM
-0.6
-1.4
-0.7
-1.6
-0.0
stress
R2A with Cobalt chloride 0.3 mM
-1.0
-2.4
-0.5
-0.1
-0.1
carbon source
Trisodium citrate (C)
-0.4
-1.2
-0.5
-1.8
+0.0
stress
R2A with Chloride 300 mM
-0.5
-1.5
-0.6
-1.2
+0.1
carbon source
Octanoic (C)
-0.4
-1.5
-0.7
-0.4
-0.7
stress
R2A with Nickel (II) chloride 0.35 mM
-0.7
-1.5
-0.7
-1.3
+0.5
carbon source
succinate (C)
-0.5
-1.4
-0.7
-0.7
+0.1
stress
R2A with Nickel (II) chloride 0.25 mM
-0.7
-1.6
-0.5
-0.6
+0.2
stress
R2A with Sisomicin 0.035 mg/ml
-0.9
-1.4
-1.0
+0.0
+0.2
stress
R2A with Chloride 300 mM
+0.1
-0.8
-0.9
-1.5
+0.2
stress
R2A with Nickel (II) chloride 0.35 mM
-0.2
-1.4
-0.8
-0.8
+0.2
oxygen_nitrate
exometabolites; 5% oxygen; 5 mM nitrate
-0.3
-1.8
+0.4
-0.6
-0.1
stress
R2A with Doxycycline hyclate 0.0001 mg/ml
+0.4
-1.5
+0.3
+0.6
+0.4
lb
LB
+0.2
-1.2
-0.3
+1.0
+0.7
stress
R2A with Cisplatin 0.001 mg/ml
+0.9
+1.0
+0.5
+0.3
-0.4
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
+0.2
+1.1
+0.1
+1.3
-0.4
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
-0.0
+1.1
+0.6
+1.9
-0.8
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
+0.2
+1.2
+0.5
+2.1
-0.6
carbon source
Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
+0.7
+2.1
+0.7
+1.7
+0.0
stress
R2A with Lomefloxacin 0.00075 mM
+1.5
+1.5
+1.7
+0.2
+0.6
stress
R2A with Lomefloxacin 0.001 mM
+1.2
+1.7
+2.0
+0.9
-0.4
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