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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS15550 and RR42_RS15555 are separated by 60 nucleotides
RR42_RS15555 and RR42_RS15560 are separated by 84 nucleotides
RR42_RS15560 and RR42_RS15565 are separated by 258 nucleotides
RR42_RS15565 and RR42_RS15570 are separated by 66 nucleotides
RR42_RS15550: RR42_RS15550 - pilus assembly protein, at 3,358,869 to 3,359,441
_RS15550
RR42_RS15555: RR42_RS15555 - diaminohydroxyphosphoribosylaminopyrimidine deaminase, at 3,359,502 to 3,360,620
_RS15555
RR42_RS15560: RR42_RS15560 - riboflavin synthase subunit alpha, at 3,360,705 to 3,361,334
_RS15560
RR42_RS15565: RR42_RS15565 - 3,4-dihydroxy-2-butanone 4-phosphate synthase, at 3,361,593 to 3,362,705
_RS15565
RR42_RS15570: RR42_RS15570 - 6,7-dimethyl-8-ribityllumazine synthase, at 3,362,772 to 3,363,275
_RS15570
Group
Condition
RR42
_RS15550
RR42
_RS15555
RR42
_RS15560
RR42
_RS15565
RR42
_RS15570
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
-0.2
N.D.
N.D.
-0.9
N.D.
carbon source
Disodium Glutarate (C)
-0.0
N.D.
N.D.
-1.0
N.D.
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
+0.1
N.D.
N.D.
-1.1
N.D.
nitrogen source
nitrite (N)
-0.1
N.D.
N.D.
-0.7
N.D.
carbon source
Protocatechuic Acid (C)
+0.1
N.D.
N.D.
-0.9
N.D.
stress
R2A with Chlorite 4 mM
-0.3
N.D.
N.D.
-0.3
N.D.
stress
R2A with Nickel (II) chloride 0.5 mM
-0.2
N.D.
N.D.
-0.4
N.D.
stress
R2A with Nickel (II) chloride 0.25 mM
-0.3
N.D.
N.D.
-0.3
N.D.
carbon source
Disodium Glutarate (C)
+0.1
N.D.
N.D.
-0.7
N.D.
carbon source
Protocatechuic Acid (C)
+0.1
N.D.
N.D.
-0.6
N.D.
carbon source
butyrate (C)
+0.1
N.D.
N.D.
-0.5
N.D.
nitrogen source
casaminos (N)
-0.6
N.D.
N.D.
+0.2
N.D.
carbon source
Azelaic (C)
+0.4
N.D.
N.D.
-0.6
N.D.
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
+0.2
N.D.
N.D.
-0.4
N.D.
carbon source
Azelaic (C)
+0.3
N.D.
N.D.
-0.4
N.D.
nitrogen source
Glucuronamide (N)
-0.3
N.D.
N.D.
+0.3
N.D.
nitrogen source
L-Isoleucine (N)
-0.3
N.D.
N.D.
+0.3
N.D.
nitrogen source
L-Valine (N)
-0.2
N.D.
N.D.
+0.4
N.D.
nitrogen source
D-Alanine (N)
-0.2
N.D.
N.D.
+0.4
N.D.
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
+0.5
N.D.
N.D.
-0.3
N.D.
stress
R2A with Lomefloxacin 0.001 mM
+0.6
N.D.
N.D.
-0.2
N.D.
nitrogen source
L-Valine (N)
-0.2
N.D.
N.D.
+0.6
N.D.
carbon source
Hexanoic (C)
+0.5
N.D.
N.D.
-0.1
N.D.
r2a
R2A
+0.6
N.D.
N.D.
-0.1
N.D.
carbon source
L-Lactate (C)
+0.5
N.D.
N.D.
+0.1
N.D.
stress
R2A with Cisplatin 0.001 mg/ml
+0.1
N.D.
N.D.
+0.5
N.D.
stress
R2A with Vancomycin 0.5 mg/ml
+0.8
N.D.
N.D.
-0.1
N.D.
stress
R2A with Vancomycin 0.5 mg/ml
+1.3
N.D.
N.D.
-0.6
N.D.
lb
LB
-0.0
N.D.
N.D.
+0.7
N.D.
nitrogen source
L-Serine (N)
+0.4
N.D.
N.D.
+0.4
N.D.
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