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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS15535 and RR42_RS15540 are separated by 95 nucleotides
RR42_RS15540 and RR42_RS15545 are separated by 64 nucleotides
RR42_RS15545 and RR42_RS15550 are separated by 7 nucleotides
RR42_RS15550 and RR42_RS15555 are separated by 60 nucleotides
RR42_RS15535: RR42_RS15535 - hypothetical protein, at 3,356,270 to 3,356,818
_RS15535
RR42_RS15540: RR42_RS15540 - hypothetical protein, at 3,356,914 to 3,358,347
_RS15540
RR42_RS15545: RR42_RS15545 - pilus assembly protein PilE, at 3,358,412 to 3,358,861
_RS15545
RR42_RS15550: RR42_RS15550 - pilus assembly protein, at 3,358,869 to 3,359,441
_RS15550
RR42_RS15555: RR42_RS15555 - diaminohydroxyphosphoribosylaminopyrimidine deaminase, at 3,359,502 to 3,360,620
_RS15555
Group
Condition
RR42
_RS15535
RR42
_RS15540
RR42
_RS15545
RR42
_RS15550
RR42
_RS15555
carbon source
D-Gluconic Acid (C)
-0.4
+0.0
-0.7
-0.3
N.D.
carbon source
L-Histidine (C)
-0.6
-0.2
-0.5
+0.2
N.D.
stress
R2A with Nickel (II) chloride 0.5 mM
+0.0
-0.3
-0.5
-0.2
N.D.
nitrogen source
L-Leucine (N)
-0.7
-0.0
-0.3
+0.1
N.D.
carbon source
Protocatechuic Acid (C)
-0.5
-0.2
-0.3
+0.1
N.D.
carbon source
Valeric (C)
-0.6
-0.0
+0.3
-0.5
N.D.
nitrogen source
L-Threonine (N)
-0.4
-0.1
-0.4
+0.1
N.D.
carbon source
L-Malic (C)
-0.5
+0.2
-0.3
-0.2
N.D.
carbon source
L-Proline (C)
-0.4
-0.2
-0.3
+0.2
N.D.
carbon source
L-Tryptophan (C)
-0.3
-0.1
-0.5
+0.2
N.D.
carbon source
L-Alanine (C)
-0.6
+0.1
-0.4
+0.3
N.D.
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
-0.2
+0.0
-0.6
+0.4
N.D.
carbon source
Octanoic (C)
-0.4
-0.1
+0.4
-0.3
N.D.
stress
R2A with Paraquat dichloride 0.064 mg/ml
-0.2
-0.1
+0.3
-0.3
N.D.
nitrogen source
Glycine (N)
+0.5
-0.2
-0.4
-0.1
N.D.
nitrogen source
casaminos (N)
+0.2
+0.1
+0.2
-0.6
N.D.
stress
R2A with Chloride 300 mM
+0.5
+0.1
-0.6
+0.2
N.D.
carbon source
L-Lactate (C)
+0.2
-0.0
-0.3
+0.5
N.D.
nitrogen source
Glucuronamide (N)
+0.3
-0.1
+0.6
-0.3
N.D.
nitrogen source
L-Glutamine (N)
+0.2
+0.3
+0.2
-0.2
N.D.
temperature
R2A 23C
-0.1
+0.5
-0.2
+0.3
N.D.
stress
R2A with Vancomycin 0.5 mg/ml
-0.2
+0.1
-0.1
+0.8
N.D.
stress
R2A with Lomefloxacin 0.001 mM
-0.4
+0.4
+0.4
+0.6
N.D.
stress
R2A with Vancomycin 0.5 mg/ml
-0.1
-0.2
-0.1
+1.3
N.D.
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
+0.3
+0.1
+0.1
+0.5
N.D.
carbon source
Hexanoic (C)
+0.2
+0.0
+0.3
+0.5
N.D.
carbon source
adipate (C)
+0.0
+0.3
+0.4
+0.3
N.D.
stress
R2A with Cephalothin 0.25 mg/ml
+0.2
+0.0
+0.6
+0.2
N.D.
stress
R2A with nitrate 200 mM
+0.1
+0.2
+0.4
+0.3
N.D.
carbon source
Suberic (C)
+0.4
+0.1
+0.1
+0.5
N.D.
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