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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS15520 and RR42_RS15525 are separated by 186 nucleotides
RR42_RS15525 and RR42_RS15530 overlap by 4 nucleotides
RR42_RS15530 and RR42_RS15535 are separated by 74 nucleotides
RR42_RS15535 and RR42_RS15540 are separated by 95 nucleotides
RR42_RS15520: RR42_RS15520 - hypothetical protein, at 3,354,208 to 3,354,639
_RS15520
RR42_RS15525: RR42_RS15525 - hypothetical protein, at 3,354,826 to 3,355,266
_RS15525
RR42_RS15530: RR42_RS15530 - membrane protein, at 3,355,263 to 3,356,195
_RS15530
RR42_RS15535: RR42_RS15535 - hypothetical protein, at 3,356,270 to 3,356,818
_RS15535
RR42_RS15540: RR42_RS15540 - hypothetical protein, at 3,356,914 to 3,358,347
_RS15540
Group
Condition
RR42
_RS15520
RR42
_RS15525
RR42
_RS15530
RR42
_RS15535
RR42
_RS15540
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
+0.0
-3.8
-0.1
+0.3
+0.1
stress
R2A with Nickel (II) chloride 0.35 mM
+0.2
-3.6
-0.2
+0.2
+0.0
lb
LB
+0.0
-4.0
+0.4
+0.6
-0.0
carbon source
D,L-Lactate (C)
-0.1
-2.3
-0.4
-0.2
+0.0
carbon source
a-Ketoglutaric (C)
+0.1
-3.1
-0.1
+0.2
+0.0
carbon source
L-Alanine (C)
+0.1
-2.4
-0.1
-0.6
+0.1
stress
R2A with Zinc 0.1 mM
+0.0
-2.4
-0.1
+0.1
-0.2
stress
R2A with Vancomycin 0.5 mg/ml
+0.1
-2.3
-0.0
-0.1
-0.2
stress
R2A with Cisplatin 0.001 mg/ml
-0.2
-2.3
-0.1
+0.0
+0.1
stress
R2A with Cisplatin 0.001 mg/ml
-0.2
-1.2
-0.0
-0.7
-0.0
stress
R2A with Sisomicin 0.035 mg/ml
-0.1
-1.9
-0.0
-0.0
-0.0
carbon source
L-Glutamine (C)
+0.0
-1.4
-0.2
-0.3
-0.1
carbon source
L-Asparagine (C)
-0.1
-2.0
+0.0
+0.1
-0.0
stress
R2A with D-Cycloserine 0.5 mg/ml
+0.2
-1.5
-0.1
-0.2
-0.3
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
-0.1
-2.4
+0.2
+0.2
+0.2
stress
R2A with Cobalt chloride 0.5 mM
-0.1
-1.5
-0.3
-0.1
+0.1
carbon source
Suberic (C)
-0.0
-2.0
-0.4
+0.4
+0.1
carbon source
L-Lactate (C)
-0.0
-1.6
-0.3
+0.1
+0.1
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
-0.0
-1.7
+0.1
+0.2
-0.0
carbon source
propionate (C)
+0.1
-1.7
-0.0
+0.1
+0.1
stress
R2A with Vancomycin 0.5 mg/ml
+0.3
-1.4
-0.1
-0.2
+0.1
carbon source
L-Malic (C)
+0.3
-1.0
-0.1
-0.5
+0.2
stress
R2A with nitrate 200 mM
+0.2
-1.9
+0.1
+0.1
+0.2
carbon source
succinate (C)
+0.1
-1.5
+0.1
+0.2
+0.1
stress
R2A with Lomefloxacin 0.00075 mM
+0.4
-1.6
+0.2
+0.1
+0.2
stress
R2A with Lomefloxacin 0.001 mM
-0.1
+1.2
-0.1
-0.4
+0.4
oxygen_nitrate
exometabolites; 10% oxygen; 5 mM nitrate
-0.1
+1.8
-0.0
-0.2
-0.2
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
-0.3
+1.2
+0.3
+0.5
+0.1
carbon source
Azelaic (C)
+0.4
+1.3
+0.3
+0.4
+0.0
nitrogen source
L-Glutamine (N)
+0.1
+1.5
+0.2
+0.2
+0.3
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RR42_RS15530
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