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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS15445 and RR42_RS15450 are separated by 153 nucleotides
RR42_RS15450 and RR42_RS15455 are separated by 18 nucleotides
RR42_RS15455 and RR42_RS15460 are separated by 26 nucleotides
RR42_RS15460 and RR42_RS15465 are separated by 229 nucleotides
RR42_RS15445: RR42_RS15445 - 7-cyano-7-deazaguanine synthase, at 3,337,877 to 3,338,560
_RS15445
RR42_RS15450: RR42_RS15450 - Tol system periplasmic component YbgF, at 3,338,714 to 3,339,472
_RS15450
RR42_RS15455: RR42_RS15455 - membrane protein, at 3,339,491 to 3,339,997
_RS15455
RR42_RS15460: RR42_RS15460 - translocation protein TolB, at 3,340,024 to 3,341,352
_RS15460
RR42_RS15465: RR42_RS15465 - TonB-dependent receptor, at 3,341,582 to 3,342,736
_RS15465
Group
Condition
RR42
_RS15445
RR42
_RS15450
RR42
_RS15455
RR42
_RS15460
RR42
_RS15465
stress
R2A with Nickel (II) chloride 0.5 mM
-0.2
-2.0
-5.6
-1.8
-3.1
stress
R2A with Nickel (II) chloride 0.35 mM
+0.3
-3.1
-1.9
-2.1
-4.8
stress
R2A with Bacitracin 0.5 mg/ml
-0.3
-1.0
-5.7
-1.9
-2.1
nitrogen source
Glycine (N)
+0.2
-0.4
-5.2
-2.5
-2.3
stress
R2A with Vancomycin 0.5 mg/ml
+0.1
-1.8
-4.0
-2.7
-1.4
nitrogen source
D-Alanine (N)
+0.2
-1.4
-3.8
-2.1
-1.8
stress
R2A with nitrate 150 mM
+0.0
-0.6
-2.1
-2.3
-3.0
stress
R2A with Nickel (II) chloride 0.25 mM
-0.4
-0.7
-2.5
-2.3
-1.8
nitrogen source
D-Alanine (N)
+0.1
-0.7
-3.1
-2.3
-1.3
stress
R2A with Chloride 300 mM
-0.3
-0.9
-1.6
-3.0
-1.5
stress
R2A with nitrate 200 mM
-0.1
-0.8
-2.4
-2.8
-0.8
stress
R2A with Cobalt chloride 0.3 mM
-0.5
-0.2
-2.8
-1.8
-1.7
carbon source
Disodium Glutarate (C)
+0.2
-0.3
-3.8
-1.6
-1.3
stress
R2A with Cobalt chloride 0.5 mM
-0.2
-1.7
-1.7
-1.7
-1.3
carbon source
Pimelic (C)
-0.5
-0.2
-2.9
-1.4
-1.6
stress
R2A with Doxycycline hyclate 0.0001 mg/ml
-1.3
+0.6
-1.4
-1.8
-2.1
stress
R2A with Polymyxin B sulfate 0.005 mg/ml
+0.3
-0.0
-3.4
-2.4
-0.5
stress
R2A with Chloride 300 mM
-0.3
-1.0
-1.7
-1.2
-1.6
carbon source
D-Gluconic Acid (C)
-0.3
-2.0
-1.6
-1.1
-0.5
stress
R2A with Cisplatin 0.001 mg/ml
-0.6
-2.4
-0.6
-1.7
-0.2
carbon source
adipate (C)
-0.1
+0.1
-2.6
-1.9
-1.0
carbon source
Pimelic (C)
-0.3
+0.3
-2.7
-1.5
-1.2
stress
R2A with Nickel (II) chloride 0.25 mM
-0.1
-0.4
-2.0
-1.6
-1.2
stress
R2A with nitrate 200 mM
-0.2
-0.7
-1.9
-1.3
-1.0
carbon source
Disodium Glutarate (C)
+0.1
-0.2
-2.7
-1.3
-0.9
stress
R2A with Vancomycin 0.5 mg/ml
-0.1
-0.2
-2.3
-1.0
-1.2
stress
R2A with Zinc 0.1 mM
-0.1
-0.4
-1.0
-1.7
-1.5
carbon source
adipate (C)
+0.1
+0.4
-1.6
-1.7
-1.5
carbon source
Suberic (C)
+0.5
-1.6
-1.0
-1.0
-1.1
stress
R2A with Nickel (II) chloride 0.35 mM
+0.4
-0.3
-1.4
-0.9
-1.6
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