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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS15435 and RR42_RS15440 are separated by 71 nucleotides
RR42_RS15440 and RR42_RS15445 are separated by 65 nucleotides
RR42_RS15445 and RR42_RS15450 are separated by 153 nucleotides
RR42_RS15450 and RR42_RS15455 are separated by 18 nucleotides
RR42_RS15435: RR42_RS15435 - tRNA-Lys, at 3,336,549 to 3,336,624
_RS15435
RR42_RS15440: RR42_RS15440 - transporter, at 3,336,696 to 3,337,811
_RS15440
RR42_RS15445: RR42_RS15445 - 7-cyano-7-deazaguanine synthase, at 3,337,877 to 3,338,560
_RS15445
RR42_RS15450: RR42_RS15450 - Tol system periplasmic component YbgF, at 3,338,714 to 3,339,472
_RS15450
RR42_RS15455: RR42_RS15455 - membrane protein, at 3,339,491 to 3,339,997
_RS15455
Group
Condition
RR42
_RS15435
RR42
_RS15440
RR42
_RS15445
RR42
_RS15450
RR42
_RS15455
stress
R2A with Nickel (II) chloride 0.5 mM
N.D.
+0.5
-0.2
-2.0
-5.6
stress
R2A with Bacitracin 0.5 mg/ml
N.D.
+0.0
-0.3
-1.0
-5.7
stress
R2A with Vancomycin 0.5 mg/ml
N.D.
+0.1
+0.1
-1.8
-4.0
nitrogen source
Glycine (N)
N.D.
+0.0
+0.2
-0.4
-5.2
nitrogen source
D-Alanine (N)
N.D.
+0.2
+0.2
-1.4
-3.8
stress
R2A with Nickel (II) chloride 0.35 mM
N.D.
+0.6
+0.3
-3.1
-1.9
carbon source
Disodium Glutarate (C)
N.D.
-0.1
+0.2
-0.3
-3.8
carbon source
Pimelic (C)
N.D.
-0.3
-0.5
-0.2
-2.9
nitrogen source
D-Alanine (N)
N.D.
+0.0
+0.1
-0.7
-3.1
stress
R2A with Nickel (II) chloride 0.25 mM
N.D.
-0.1
-0.4
-0.7
-2.5
carbon source
D-Gluconic Acid (C)
N.D.
+0.1
-0.3
-2.0
-1.6
stress
R2A with Paraquat dichloride 0.064 mg/ml
N.D.
+0.1
-0.3
-1.0
-2.5
stress
R2A with nitrate 200 mM
N.D.
-0.2
-0.1
-0.8
-2.4
stress
R2A with Cisplatin 0.001 mg/ml
N.D.
+0.1
-0.6
-2.4
-0.6
stress
R2A with Polymyxin B sulfate 0.005 mg/ml
N.D.
-0.0
+0.3
-0.0
-3.4
stress
R2A with Vancomycin 0.5 mg/ml
N.D.
-0.6
-0.1
-0.2
-2.3
stress
R2A with Chloride 300 mM
N.D.
-0.1
-0.3
-1.0
-1.7
stress
R2A with Chloride 300 mM
N.D.
+0.0
-0.3
-0.9
-1.6
stress
R2A with nitrate 150 mM
N.D.
-0.0
+0.0
-0.6
-2.1
stress
R2A with Nickel (II) chloride 0.25 mM
N.D.
-0.2
-0.1
-0.4
-2.0
carbon source
adipate (C)
N.D.
-0.1
-0.1
+0.1
-2.6
stress
R2A with Cobalt chloride 0.3 mM
N.D.
+0.8
-0.5
-0.2
-2.8
stress
R2A with nitrate 200 mM
N.D.
+0.1
-0.2
-0.7
-1.9
stress
R2A with Cobalt chloride 0.5 mM
N.D.
+0.9
-0.2
-1.7
-1.7
carbon source
Pimelic (C)
N.D.
+0.1
-0.3
+0.3
-2.7
carbon source
Disodium Glutarate (C)
N.D.
+0.2
+0.1
-0.2
-2.7
carbon source
Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
N.D.
+0.0
-1.7
+0.1
-1.0
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
N.D.
-0.0
-2.6
-0.0
+0.1
stress
R2A with Doxycycline hyclate 0.0001 mg/ml
N.D.
-0.1
-1.3
+0.6
-1.4
carbon source
Suberic (C)
N.D.
+0.0
+0.5
-1.6
-1.0
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