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Gene
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Cofit
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS15425 and RR42_RS15430 are separated by 45 nucleotides
RR42_RS15430 and RR42_RS15435 are separated by 88 nucleotides
RR42_RS15435 and RR42_RS15440 are separated by 71 nucleotides
RR42_RS15440 and RR42_RS15445 are separated by 65 nucleotides
RR42_RS15425: RR42_RS15425 - membrane protein, at 3,333,362 to 3,334,519
_RS15425
RR42_RS15430: RR42_RS15430 - peptidase, at 3,334,565 to 3,336,460
_RS15430
RR42_RS15435: RR42_RS15435 - tRNA-Lys, at 3,336,549 to 3,336,624
_RS15435
RR42_RS15440: RR42_RS15440 - transporter, at 3,336,696 to 3,337,811
_RS15440
RR42_RS15445: RR42_RS15445 - 7-cyano-7-deazaguanine synthase, at 3,337,877 to 3,338,560
_RS15445
Group
Condition
RR42
_RS15425
RR42
_RS15430
RR42
_RS15435
RR42
_RS15440
RR42
_RS15445
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
-0.6
+0.2
N.D.
-0.2
-2.3
stress
R2A with Doxycycline hyclate 0.0001 mg/ml
-0.4
-0.4
N.D.
-0.1
-1.3
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
+0.1
+0.3
N.D.
-0.0
-2.6
carbon source
Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
-0.8
+0.4
N.D.
+0.0
-1.7
carbon source
L-Lactate (C)
-0.8
-0.2
N.D.
-0.2
-0.4
stress
R2A with Chlorite 4 mM
-0.4
+0.1
N.D.
-0.1
-1.0
carbon source
propionate (C)
-0.9
+0.0
N.D.
-0.1
-0.2
nitrogen source
nitrite (N)
+0.2
-0.1
N.D.
-0.7
-0.6
lb
LB
-0.1
-0.8
N.D.
-0.5
+0.2
oxygen_nitrate
exometabolites; 10% oxygen; 5 mM nitrate
-0.5
-0.1
N.D.
-0.1
-0.3
stress
R2A with sodium fluoride 100 mM
-0.1
+0.0
N.D.
-0.3
-0.6
carbon source
L-Leucine (C)
+0.1
+0.2
N.D.
-0.0
-0.8
stress
R2A with D-Cycloserine 0.5 mg/ml
-0.9
-0.1
N.D.
-0.0
+0.4
carbon source
a-Ketoglutaric (C)
+0.1
+0.3
N.D.
-0.2
-0.7
carbon source
L-Glutamine (C)
+0.3
+0.1
N.D.
-0.3
-0.5
nitrogen source
L-Valine (N)
+0.4
-0.2
N.D.
-0.2
-0.4
carbon source
L-Tryptophan (C)
-0.1
+0.3
N.D.
+0.2
-0.7
stress
R2A with Cisplatin 0.001 mg/ml
+0.3
-0.0
N.D.
+0.1
-0.6
carbon source
Protocatechuic Acid (C)
-0.4
+0.2
N.D.
+0.4
-0.5
carbon source
butyrate (C)
+0.3
+0.3
N.D.
-0.1
-0.7
carbon source
Pimelic (C)
+0.4
+0.2
N.D.
-0.3
-0.5
stress
R2A with Nickel (II) chloride 0.25 mM
+0.5
+0.0
N.D.
-0.1
-0.4
carbon source
L-Lactate (C)
+0.3
+0.1
N.D.
+0.2
-0.6
carbon source
Suberic (C)
-0.6
+0.2
N.D.
+0.0
+0.5
carbon source
Octanoic (C)
+0.7
+0.3
N.D.
-0.0
-0.5
stress
R2A with Lomefloxacin 0.001 mM
+0.5
-0.2
N.D.
+0.4
-0.0
stress
R2A with Cobalt chloride 0.3 mM
+0.4
+0.2
N.D.
+0.8
-0.5
stress
R2A with Nickel (II) chloride 0.5 mM
+0.4
+0.4
N.D.
+0.5
-0.2
stress
R2A with Nickel (II) chloride 0.35 mM
+0.2
+0.1
N.D.
+0.6
+0.3
stress
R2A with Cobalt chloride 0.5 mM
+0.5
+0.3
N.D.
+0.9
-0.2
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