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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS15345 and RR42_RS15350 overlap by 4 nucleotides
RR42_RS15350 and RR42_RS15355 are separated by 58 nucleotides
RR42_RS15355 and RR42_RS15360 are separated by 8 nucleotides
RR42_RS15360 and RR42_RS15365 are separated by 171 nucleotides
RR42_RS15345: RR42_RS15345 - long-chain fatty acid--CoA ligase, at 3,318,959 to 3,320,512
_RS15345
RR42_RS15350: RR42_RS15350 - BEC protein, at 3,320,509 to 3,321,753
_RS15350
RR42_RS15355: RR42_RS15355 - alpha/beta hydrolase, at 3,321,812 to 3,322,642
_RS15355
RR42_RS15360: RR42_RS15360 - peptidase M29, at 3,322,651 to 3,323,757
_RS15360
RR42_RS15365: RR42_RS15365 - flavin reductase, at 3,323,929 to 3,324,483
_RS15365
Group
Condition
RR42
_RS15345
RR42
_RS15350
RR42
_RS15355
RR42
_RS15360
RR42
_RS15365
stress
R2A with Lomefloxacin 0.001 mM
+0.4
-0.0
-0.2
-0.4
-0.9
stress
R2A with Vancomycin 0.5 mg/ml
-0.2
+0.3
-0.0
-0.3
-0.9
carbon source
Protocatechuic Acid (C)
-0.3
+0.0
-0.7
+0.0
-0.1
carbon source
L-Asparagine (C)
-0.3
-0.1
+0.1
-0.3
-0.4
carbon source
Azelaic (C)
-0.3
+0.1
-0.4
+0.2
-0.5
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
-0.2
-0.1
-0.2
+0.2
-0.4
carbon source
Octanoic (C)
-0.1
+0.1
-0.6
+0.1
-0.2
carbon source
Suberic (C)
-0.2
+0.2
-0.2
-0.2
-0.3
carbon source
adipate (C)
+0.0
-0.2
-0.3
+0.4
-0.5
carbon source
Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
-0.1
-0.1
-0.5
+0.3
-0.1
stress
R2A with Chloride 300 mM
+0.1
-0.1
-0.3
+0.2
-0.4
stress
R2A with Cobalt chloride 0.5 mM
+0.1
-0.2
+0.2
+0.1
-0.7
carbon source
Suberic (C)
-0.4
+0.1
-0.4
+0.2
-0.1
stress
R2A with D-Cycloserine 0.5 mg/ml
-0.1
+0.1
-1.0
+0.3
+0.3
stress
R2A with Chlorite 4 mM
+0.0
-0.1
+0.3
+0.3
-0.8
nitrogen source
D-Alanine (N)
+0.0
-0.1
-0.5
+0.1
+0.2
carbon source
Protocatechuic Acid (C)
-0.3
-0.1
-0.0
+0.4
-0.1
nitrogen source
L-Glutamine (N)
+0.2
-0.3
-0.4
+0.2
+0.2
stress
R2A with Vancomycin 0.5 mg/ml
+0.2
+0.3
+0.1
-0.2
-0.2
carbon source
adipate (C)
-0.2
+0.0
-0.4
+0.5
+0.2
carbon source
Ethanol (C)
+0.2
+0.0
-0.5
+0.4
+0.0
lb
LB
+0.3
-0.0
-0.4
-0.1
+0.4
stress
R2A with copper (II) chloride 0.25 mM
-0.0
+0.2
-0.3
-0.1
+0.5
stress
R2A with Thallium(I) acetate 0.001 mg/ml
+0.3
+0.1
-0.5
+0.3
+0.0
stress
R2A with Cobalt chloride 0.3 mM
-0.0
+0.4
+0.5
+0.4
-0.7
carbon source
Carbon source Phenylacetic 2.5 mM
-0.2
-0.1
+0.2
+0.3
+0.2
stress
R2A with Nickel (II) chloride 0.5 mM
+0.0
+0.3
+0.3
+0.2
-0.2
carbon source
Carbon source D,L-Lactate 10 mM
-0.2
+0.0
+0.4
+0.3
+0.2
stress
R2A with A22 0.01 mg/ml
+0.1
-0.1
+0.5
+0.2
+0.2
stress
R2A with Zinc 0.1 mM
+0.0
+0.3
+0.2
+0.2
+0.3
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