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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS15270 and RR42_RS15275 are separated by 232 nucleotides
RR42_RS15275 and RR42_RS15280 are separated by 57 nucleotides
RR42_RS15280 and RR42_RS15285 are separated by 260 nucleotides
RR42_RS15285 and RR42_RS15290 are separated by 65 nucleotides
RR42_RS15270: RR42_RS15270 - gamma-glutamyl cyclotransferase, at 3,303,806 to 3,304,510
_RS15270
RR42_RS15275: RR42_RS15275 - ankyrin, at 3,304,743 to 3,305,330
_RS15275
RR42_RS15280: RR42_RS15280 - long-chain fatty acid--CoA ligase, at 3,305,388 to 3,307,103
_RS15280
RR42_RS15285: RR42_RS15285 - thioredoxin, at 3,307,364 to 3,308,209
_RS15285
RR42_RS15290: RR42_RS15290 - cupin, at 3,308,275 to 3,308,664
_RS15290
Group
Condition
RR42
_RS15270
RR42
_RS15275
RR42
_RS15280
RR42
_RS15285
RR42
_RS15290
carbon source
Heptanoic (C)
+0.1
-0.5
-1.9
+0.2
-0.4
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
-0.0
-1.5
+0.0
+0.0
-0.2
carbon source
Hexanoic (C)
-0.0
-0.5
-1.2
+0.1
+0.1
carbon source
Hexanoic (C)
+0.0
+0.1
-1.3
+0.1
-0.3
carbon source
Heptanoic (C)
+0.1
+0.2
-1.8
+0.2
-0.1
stress
R2A with Zinc 0.1 mM
-0.1
+0.0
+0.1
+0.2
-1.1
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
-0.3
-0.4
-0.0
-0.5
+0.4
carbon source
Disodium Glutarate (C)
+0.3
-0.3
-0.0
-0.1
-0.7
carbon source
Octanoic (C)
+0.3
+0.2
-0.5
+0.1
-0.8
carbon source
Octanoic (C)
+0.1
+0.6
-0.9
+0.0
-0.4
stress
R2A with Nickel (II) chloride 0.5 mM
+0.2
-0.4
+0.2
+0.0
-0.5
nitrogen source
Glycine (N)
+0.1
-0.7
-0.0
-0.3
+0.4
oxygen_nitrate
exometabolites; 10% oxygen; 5 mM nitrate
+0.1
+0.5
+0.0
-0.4
-0.6
carbon source
Dodecandioic (C)
-0.1
+0.5
-0.8
+0.0
+0.2
carbon source
Protocatechuic Acid (C)
-0.1
-0.4
+0.2
-0.6
+0.5
carbon source
Dodecandioic (C)
+0.2
+0.1
-0.8
+0.0
+0.3
carbon source
Protocatechuic Acid (C)
+0.1
+0.5
+0.3
-0.0
-0.6
lb
LB
+0.5
+0.1
+0.3
-0.1
-0.5
nitrogen source
L-Leucine (N)
-0.5
+0.1
+0.1
-0.2
+1.0
carbon source
Carbon source Phenylacetic 2.5 mM
+0.3
-0.2
-0.0
-0.2
+0.7
stress
R2A with nitrate 150 mM
+0.2
+0.5
+0.0
+0.2
-0.4
nitrogen source
L-Valine (N)
-0.4
+0.3
-0.0
+0.1
+0.6
carbon source
adipate (C)
+0.2
+0.8
+0.1
-0.3
+0.1
carbon source
adipate (C)
+0.6
+0.7
+0.1
+0.1
-0.4
carbon source
L-Tryptophan (C)
+0.3
-0.2
+0.1
+0.1
+0.8
stress
R2A with Cisplatin 0.001 mg/ml
-0.5
+1.1
+0.3
+0.1
+0.2
carbon source
succinate (C)
-0.1
+0.7
+0.1
-0.1
+0.8
nitrogen source
nitrite (N)
+0.6
+1.0
-0.0
-0.2
+0.2
stress
R2A with Lomefloxacin 0.00075 mM
+0.2
+1.2
-0.1
+0.1
+0.3
stress
R2A with Lomefloxacin 0.001 mM
+0.1
+1.8
+0.0
-0.2
+0.3
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RR42_RS15280
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