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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS15225 and RR42_RS15230 are separated by 79 nucleotides
RR42_RS15230 and RR42_RS15235 are separated by 11 nucleotides
RR42_RS15235 and RR42_RS15240 are separated by 145 nucleotides
RR42_RS15240 and RR42_RS15245 are separated by 99 nucleotides
RR42_RS15225: RR42_RS15225 - RNA-binding protein, at 3,298,691 to 3,298,909
_RS15225
RR42_RS15230: RR42_RS15230 - membrane protein, at 3,298,989 to 3,299,372
_RS15230
RR42_RS15235: RR42_RS15235 - hypothetical protein, at 3,299,384 to 3,299,986
_RS15235
RR42_RS15240: RR42_RS15240 - membrane protein, at 3,300,132 to 3,300,443
_RS15240
RR42_RS15245: RR42_RS15245 - alpha/beta hydrolase, at 3,300,543 to 3,300,941
_RS15245
Group
Condition
RR42
_RS15225
RR42
_RS15230
RR42
_RS15235
RR42
_RS15240
RR42
_RS15245
stress
R2A with Nickel (II) chloride 0.35 mM
-2.3
-0.1
-0.9
-0.0
-0.5
stress
R2A with Vancomycin 0.5 mg/ml
-0.3
-0.5
-0.6
-0.3
-0.6
stress
R2A with nitrate 200 mM
-2.0
-0.2
-0.2
+0.5
-0.3
stress
R2A with Chloride 300 mM
-1.2
-0.5
-0.6
-0.3
+0.6
stress
R2A with Thallium(I) acetate 0.001 mg/ml
+0.4
+0.4
+0.2
+0.1
-3.1
stress
R2A with Cobalt chloride 0.3 mM
+0.5
-0.6
-0.8
-0.3
-0.5
nitrogen source
L-Valine (N)
-0.4
-0.2
+0.1
+0.3
-1.4
stress
R2A with A22 0.01 mg/ml
-1.4
-0.4
-0.1
+0.2
+0.3
stress
R2A with Bacitracin 0.5 mg/ml
-0.5
+0.3
-0.0
-0.1
-1.0
stress
R2A with Cephalothin 0.25 mg/ml
+0.5
+0.0
-0.4
+0.2
-1.4
carbon source
Octanoic (C)
-0.5
-0.4
+0.3
-0.6
+0.5
stress
R2A with copper (II) chloride 0.25 mM
-1.3
+0.3
+0.5
+0.0
-0.2
carbon source
adipate (C)
+0.3
-0.2
+0.5
-0.0
-1.1
carbon source
Protocatechuic Acid (C)
-1.6
-0.4
+0.8
+0.6
+0.1
carbon source
Carbon source D,L-Lactate 10 mM
-0.6
+0.1
-0.3
+0.7
-0.3
oxygen_nitrate
exometabolites; 10% oxygen; 5 mM nitrate
+0.4
+0.1
+0.2
+0.1
-1.2
stress
R2A with Chloride 300 mM
+0.7
-0.6
+0.3
-0.2
-0.6
carbon source
L-Threonine (C)
-0.8
+0.1
+0.3
+0.4
-0.4
carbon source
Valeric (C)
-0.7
-0.3
+0.6
+0.2
-0.0
stress
R2A with Doxycycline hyclate 0.0001 mg/ml
-0.5
+0.5
+0.5
-0.2
-0.5
lb
LB
+1.6
-0.2
+0.4
-0.8
-1.1
nitrogen source
L-Glutamine (N)
+0.5
-0.2
+0.7
-0.4
-0.6
carbon source
Hexanoic (C)
-0.0
+0.2
+1.2
-0.4
-0.3
nitrogen source
Glucuronamide (N)
+0.5
-0.4
+0.6
+0.2
+0.4
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
+1.4
+0.1
-0.4
+0.2
-0.0
carbon source
D-Gluconic Acid (C)
+0.5
-0.3
+0.2
+0.2
+0.8
nitrogen source
L-Isoleucine (N)
+0.4
-0.2
+0.1
+0.2
+1.2
carbon source
D,L-Lactate (C)
+0.5
+0.4
-0.1
+0.4
+0.7
carbon source
Disodium Glutarate (C)
+0.9
+0.0
+0.6
+0.3
+0.6
carbon source
Suberic (C)
+0.7
+0.0
+0.8
-0.0
+0.9
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RR42_RS15235
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