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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS15200 and RR42_RS15205 are separated by 123 nucleotides
RR42_RS15205 and RR42_RS15210 are separated by 4 nucleotides
RR42_RS15210 and RR42_RS15215 are separated by 53 nucleotides
RR42_RS15215 and RR42_RS15220 are separated by 214 nucleotides
RR42_RS15200: RR42_RS15200 - phenazine biosynthesis protein PhzC/PhzF, at 3,292,974 to 3,293,834
_RS15200
RR42_RS15205: RR42_RS15205 - pyridoxamine 5'-phosphate oxidase, at 3,293,958 to 3,294,578
_RS15205
RR42_RS15210: RR42_RS15210 - negative transcriptional regulator, at 3,294,583 to 3,295,200
_RS15210
RR42_RS15215: RR42_RS15215 - carnitine dehydratase, at 3,295,254 to 3,296,693
_RS15215
RR42_RS15220: RR42_RS15220 - glutaminyl-tRNA synthetase, at 3,296,908 to 3,298,686
_RS15220
Group
Condition
RR42
_RS15200
RR42
_RS15205
RR42
_RS15210
RR42
_RS15215
RR42
_RS15220
carbon source
Suberic (C)
-1.2
-0.9
-0.0
-0.6
N.D.
stress
R2A with Cobalt chloride 0.5 mM
+0.0
-2.4
-0.2
+0.3
N.D.
carbon source
Protocatechuic Acid (C)
-0.4
-1.2
+0.2
-0.6
N.D.
nitrogen source
L-Valine (N)
-0.8
-0.9
-0.1
-0.3
N.D.
stress
R2A with D-Cycloserine 0.5 mg/ml
-1.8
+0.4
-0.3
-0.4
N.D.
carbon source
L-Histidine (C)
-1.1
-0.4
-0.2
+0.0
N.D.
carbon source
D-Fructose (C)
-0.9
-0.4
-0.3
-0.2
N.D.
carbon source
Disodium Glutarate (C)
-0.2
-1.1
-0.1
-0.1
N.D.
carbon source
Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
-0.9
+0.3
-0.1
-0.8
N.D.
carbon source
Octanoic (C)
-0.7
-0.7
+0.0
-0.1
N.D.
carbon source
Pimelic (C)
-0.3
-0.3
-0.3
-0.5
N.D.
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
+0.2
-1.0
+0.2
-0.6
N.D.
carbon source
Hexanoic (C)
-0.2
-0.7
+0.0
-0.4
N.D.
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
-1.1
-0.4
+0.3
+0.0
N.D.
carbon source
Protocatechuic Acid (C)
-0.3
-0.7
+0.2
-0.3
N.D.
stress
R2A with Cisplatin 0.001 mg/ml
+0.2
-1.1
-0.3
+0.0
N.D.
carbon source
adipate (C)
-0.0
-0.9
+0.3
-0.5
N.D.
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
-0.7
+0.4
-0.0
-0.5
N.D.
temperature
R2A 23C
-0.5
-0.6
-0.1
+0.3
N.D.
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
-1.0
+0.5
+0.1
-0.3
N.D.
carbon source
pyruvate (C)
-0.4
-0.6
+0.4
+0.1
N.D.
carbon source
L-Asparagine (C)
-0.3
+0.5
-0.4
-0.4
N.D.
nitrogen source
Glucuronamide (N)
+0.2
+0.3
-0.5
-0.3
N.D.
nitrogen source
D-Alanine (N)
-0.3
+0.7
-0.2
-0.3
N.D.
stress
R2A with Sisomicin 0.035 mg/ml
+0.3
+0.6
-0.1
-0.8
N.D.
lb
LB
-0.2
-1.0
+0.6
+0.6
N.D.
carbon source
Carbon source Phenylacetic 2.5 mM
+0.4
+0.7
+0.3
-0.4
N.D.
nitrogen source
L-Isoleucine (N)
+0.4
+0.6
-0.1
+0.3
N.D.
stress
R2A with Lomefloxacin 0.00075 mM
+0.7
+0.4
-0.1
+0.3
N.D.
stress
R2A with Chlorite 4 mM
+0.3
+0.5
+0.3
+0.4
N.D.
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