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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS15180 and RR42_RS15185 are separated by 445 nucleotides
RR42_RS15185 and RR42_RS15190 are separated by 259 nucleotides
RR42_RS15190 and RR42_RS15195 are separated by 70 nucleotides
RR42_RS15195 and RR42_RS15200 are separated by 263 nucleotides
RR42_RS15180: RR42_RS15180 - hypothetical protein, at 3,286,912 to 3,288,414
_RS15180
RR42_RS15185: RR42_RS15185 - LysR family transcriptional regulator, at 3,288,860 to 3,289,777
_RS15185
RR42_RS15190: RR42_RS15190 - MFS transporter, at 3,290,037 to 3,291,014
_RS15190
RR42_RS15195: RR42_RS15195 - gamma-glutamyltransferase, at 3,291,085 to 3,292,710
_RS15195
RR42_RS15200: RR42_RS15200 - phenazine biosynthesis protein PhzC/PhzF, at 3,292,974 to 3,293,834
_RS15200
Group
Condition
RR42
_RS15180
RR42
_RS15185
RR42
_RS15190
RR42
_RS15195
RR42
_RS15200
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
-1.2
-0.7
+0.1
-0.0
-1.0
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
-0.4
-0.3
-0.2
-0.2
-0.7
temperature
R2A 37C
-0.9
-0.2
-0.2
-0.2
-0.5
carbon source
Disodium Glutarate (C)
-0.3
-0.4
-0.2
-0.4
-0.3
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
-0.0
-0.6
-0.0
+0.1
-1.1
stress
R2A with D-Cycloserine 0.5 mg/ml
-0.8
+0.2
+0.6
+0.2
-1.8
carbon source
Suberic (C)
+0.0
-0.5
+0.2
-0.1
-1.2
carbon source
L-Histidine (C)
-0.4
+0.2
-0.2
-0.0
-1.1
stress
R2A with Nickel (II) chloride 0.35 mM
-0.4
-0.7
-0.2
-0.1
+0.0
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
+0.3
-1.2
-0.5
-0.2
+0.2
stress
R2A with copper (II) chloride 0.25 mM
-0.4
-0.9
-0.0
+0.2
-0.2
carbon source
Valeric (C)
+0.3
-0.7
-0.2
-0.2
-0.5
carbon source
Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
+0.6
-0.2
-0.6
-0.2
-0.9
carbon source
Disodium Glutarate (C)
-0.7
+0.1
-0.5
-0.1
-0.2
carbon source
D-Fructose (C)
-0.4
+0.2
-0.1
-0.1
-0.9
nitrogen source
L-Valine (N)
-0.5
+0.2
-0.2
+0.2
-0.8
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
-0.4
-0.5
+0.3
-0.5
+0.2
nitrogen source
L-Serine (N)
+0.4
-0.3
+0.0
-0.3
-0.5
lb
LB
-1.0
+0.4
-0.1
+0.3
-0.2
carbon source
succinate (C)
+0.6
-0.5
+0.1
-0.2
-0.3
stress
R2A with Lomefloxacin 0.00075 mM
-0.9
+0.0
+0.0
-0.0
+0.7
stress
R2A with Nickel (II) chloride 0.5 mM
+0.7
-0.8
+0.5
+0.0
-0.6
carbon source
succinate (C)
+0.2
+0.2
+0.2
-0.2
-0.6
stress
R2A with Paraquat dichloride 0.064 mg/ml
-0.6
+0.6
-0.1
-0.1
+0.3
carbon source
Octanoic (C)
+0.4
+0.6
-0.1
-0.2
-0.7
nitrogen source
L-Leucine (N)
+0.3
+0.2
+0.1
+0.2
-0.7
carbon source
Protocatechuic Acid (C)
+0.4
+0.0
+0.6
-0.3
-0.3
carbon source
Azelaic (C)
+1.0
+0.0
-0.2
-0.1
-0.4
stress
R2A with Dimethyl Sulfoxide 5 vol%
-0.4
+0.4
+0.2
-0.1
+0.3
stress
R2A with Zinc 0.1 mM
+0.2
+0.6
+0.5
-0.5
-0.0
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