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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS15145 and RR42_RS15150 are separated by 289 nucleotides
RR42_RS15150 and RR42_RS15155 are separated by 344 nucleotides
RR42_RS15155 and RR42_RS15160 are separated by 203 nucleotides
RR42_RS15160 and RR42_RS15165 are separated by 49 nucleotides
RR42_RS15145: RR42_RS15145 - membrane protein, at 3,277,300 to 3,278,061
_RS15145
RR42_RS15150: RR42_RS15150 - alanyl-tRNA synthetase, at 3,278,351 to 3,280,975
_RS15150
RR42_RS15155: RR42_RS15155 - CoA-transferase, at 3,281,320 to 3,282,540
_RS15155
RR42_RS15160: RR42_RS15160 - membrane protein, at 3,282,744 to 3,283,199
_RS15160
RR42_RS15165: RR42_RS15165 - ABC transporter substrate-binding protein, at 3,283,249 to 3,284,271
_RS15165
Group
Condition
RR42
_RS15145
RR42
_RS15150
RR42
_RS15155
RR42
_RS15160
RR42
_RS15165
nitrogen source
L-Leucine (N)
-0.8
N.D.
-0.1
-0.4
-0.2
stress
R2A with Zinc 0.1 mM
-0.8
N.D.
+0.3
-1.0
+0.3
nitrogen source
casaminos (N)
-1.2
N.D.
-0.1
-0.2
+0.4
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
-0.5
N.D.
-0.2
-0.5
+0.3
carbon source
Disodium Glutarate (C)
-0.0
N.D.
-0.5
+0.3
-0.5
carbon source
Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
+0.5
N.D.
-0.3
-0.6
-0.1
stress
R2A with D-Cycloserine 0.5 mg/ml
-1.1
N.D.
-0.0
+0.5
+0.4
stress
R2A with Cobalt chloride 0.3 mM
+0.5
N.D.
+0.1
-0.6
-0.2
nitrogen source
L-Citrulline (N)
-0.5
N.D.
-0.2
+0.2
+0.4
carbon source
Trisodium citrate (C)
+0.7
N.D.
+0.1
-0.8
+0.1
stress
R2A with Nickel (II) chloride 0.35 mM
+0.7
N.D.
+0.1
-0.3
-0.1
oxygen_nitrate
exometabolites; 5% oxygen; 5 mM nitrate
-0.4
N.D.
+0.2
+0.3
+0.4
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
+0.2
N.D.
-0.3
+0.7
-0.2
stress
R2A with Paraquat dichloride 0.064 mg/ml
-0.6
N.D.
+0.5
+0.4
+0.2
lb
LB
+0.5
N.D.
+0.1
-0.6
+0.6
carbon source
succinate (C)
+0.3
N.D.
+0.2
+0.7
-0.3
carbon source
Valeric (C)
+0.2
N.D.
-0.0
+1.0
-0.2
carbon source
Azelaic (C)
-0.3
N.D.
+0.2
+1.1
+0.0
stress
R2A with nitrate 200 mM
+0.5
N.D.
+0.3
+0.4
-0.1
stress
R2A with nitrate 150 mM
+0.3
N.D.
+0.3
+0.3
+0.4
carbon source
Heptanoic (C)
+0.0
N.D.
+0.2
+0.8
+0.2
carbon source
Hexanoic (C)
+0.4
N.D.
+0.1
+0.5
+0.3
carbon source
succinate (C)
+0.5
N.D.
+0.3
+0.5
+0.1
carbon source
D,L-Lactate (C)
+0.4
N.D.
+0.3
+0.8
-0.0
carbon source
Octanoic (C)
+0.4
N.D.
+0.2
+0.6
+0.4
carbon source
Suberic (C)
+0.2
N.D.
+0.4
+0.8
+0.2
carbon source
Valeric (C)
+0.4
N.D.
+0.2
+0.6
+0.5
carbon source
Heptanoic (C)
+0.7
N.D.
+0.2
+0.6
+0.2
carbon source
adipate (C)
-0.2
N.D.
+1.9
+0.4
+0.1
carbon source
adipate (C)
+0.2
N.D.
+2.1
+1.1
+0.1
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