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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS15115 and RR42_RS15120 are separated by 108 nucleotides
RR42_RS15120 and RR42_RS15125 are separated by 96 nucleotides
RR42_RS15125 and RR42_RS15130 are separated by 131 nucleotides
RR42_RS15130 and RR42_RS15135 are separated by 122 nucleotides
RR42_RS15115: RR42_RS15115 - threonine aldolase, at 3,271,209 to 3,272,240
_RS15115
RR42_RS15120: RR42_RS15120 - 4-oxalocrotonate tautomerase, at 3,272,349 to 3,272,537
_RS15120
RR42_RS15125: RR42_RS15125 - aldolase, at 3,272,634 to 3,273,407
_RS15125
RR42_RS15130: RR42_RS15130 - MFS transporter, at 3,273,539 to 3,274,750
_RS15130
RR42_RS15135: RR42_RS15135 - LysR family transcriptional regulator, at 3,274,873 to 3,275,751
_RS15135
Group
Condition
RR42
_RS15115
RR42
_RS15120
RR42
_RS15125
RR42
_RS15130
RR42
_RS15135
stress
R2A with Lomefloxacin 0.001 mM
+0.1
-2.6
+0.2
-0.2
-2.2
stress
R2A with Dimethyl Sulfoxide 5 vol%
-0.4
-2.5
-0.3
-0.3
-0.5
stress
R2A with D-Cycloserine 0.5 mg/ml
-0.3
-2.3
+0.0
-0.1
-0.5
lb
LB
-0.3
-0.5
-0.2
-0.3
-1.2
carbon source
Carbon source Phenylacetic 2.5 mM
-0.1
-1.5
+0.3
-0.1
-0.6
carbon source
D-Lactate (C)
+0.0
-1.8
+0.2
-0.2
+0.0
r2a
R2A
-0.0
-1.1
-0.0
-0.2
-0.4
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
+0.1
-0.4
-0.1
-0.1
-1.2
carbon source
L-Asparagine (C)
-0.3
-1.4
+0.1
+0.0
+0.1
oxygen_nitrate
exometabolites; 5% oxygen; 5 mM nitrate
+0.1
-1.3
+0.2
+0.0
-0.5
carbon source
Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
+0.5
-0.2
-0.0
-0.3
-0.9
stress
R2A with Lomefloxacin 0.00075 mM
-0.1
-1.0
+0.2
-0.1
+0.4
carbon source
L-Histidine (C)
-0.1
-1.0
+0.1
-0.0
+0.5
temperature
R2A 37C
+0.1
+0.3
+0.3
-0.3
-0.9
stress
R2A with Paraquat dichloride 0.064 mg/ml
-0.1
-0.5
+0.3
-0.8
+0.9
nitrogen source
L-Phenylalanine (N)
+0.1
-1.1
+0.0
+0.1
+0.7
carbon source
adipate (C)
+0.4
-0.8
+0.1
+0.3
+0.3
carbon source
succinate (C)
-0.0
+1.0
-0.1
+0.3
-0.8
stress
R2A with Vancomycin 0.5 mg/ml
+0.2
-0.2
-0.2
-0.2
+1.0
stress
R2A with nitrate 150 mM
+0.2
+0.3
+0.2
+0.6
-0.7
carbon source
Azelaic (C)
+0.4
+0.6
+0.2
+0.1
-0.4
carbon source
Disodium Glutarate (C)
+0.2
+0.8
+0.1
+0.3
-0.4
stress
R2A with Nickel (II) chloride 0.5 mM
+0.4
+0.7
+0.3
+0.0
-0.4
carbon source
Heptanoic (C)
+0.3
+0.8
+0.3
+0.2
-0.5
carbon source
adipate (C)
-0.1
+1.0
+0.3
+0.3
-0.1
carbon source
Valeric (C)
+0.4
+1.0
+0.0
+0.2
-0.1
carbon source
Azelaic (C)
+0.0
+0.8
+0.3
+0.5
+0.2
carbon source
Dodecandioic (C)
+0.3
+1.2
+0.0
+0.0
+0.2
carbon source
Octanoic (C)
+0.2
+0.6
+0.2
+0.2
+0.7
carbon source
Suberic (C)
+0.2
+0.9
+0.5
+0.1
+0.2
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