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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS14870 and RR42_RS14875 are separated by 183 nucleotides
RR42_RS14875 and RR42_RS14880 are separated by 3494 nucleotides
RR42_RS14880 and RR42_RS14885 are separated by 93 nucleotides
RR42_RS14885 and RR42_RS14890 are separated by 0 nucleotides
RR42_RS14870: RR42_RS14870 - hypothetical protein, at 3,204,588 to 3,205,784
_RS14870
RR42_RS14875: RR42_RS14875 - hypothetical protein, at 3,205,968 to 3,215,510
_RS14875
RR42_RS14880: RR42_RS14880 - hypothetical protein, at 3,219,005 to 3,219,994
_RS14880
RR42_RS14885: RR42_RS14885 - DNA-directed RNA polymerase sigma-70 factor, at 3,220,088 to 3,220,612
_RS14885
RR42_RS14890: RR42_RS14890 - hypothetical protein, at 3,220,613 to 3,221,329
_RS14890
Group
Condition
RR42
_RS14870
RR42
_RS14875
RR42
_RS14880
RR42
_RS14885
RR42
_RS14890
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
-0.0
+0.0
-0.2
-3.3
+0.1
nitrogen source
nitrite (N)
-0.1
-0.1
-0.8
-0.7
-0.2
stress
R2A with Polymyxin B sulfate 0.005 mg/ml
-0.1
+0.0
+0.4
-1.7
-0.4
nitrogen source
L-Valine (N)
+0.0
-0.1
-0.2
-0.9
-0.6
stress
R2A with Cisplatin 0.001 mg/ml
-0.3
+0.0
-0.7
-0.4
+0.3
nitrogen source
nitrate (N)
-0.2
+0.0
+0.5
-1.0
-0.1
carbon source
Valeric (C)
-0.2
+0.1
+0.6
-0.7
-0.5
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
-0.1
+0.0
-0.8
+0.6
-0.1
lb
LB
+0.2
-0.1
+0.3
-1.1
+0.5
carbon source
L-Threonine (C)
+0.3
+0.0
-0.8
+0.4
+0.1
stress
R2A with Nickel (II) chloride 0.5 mM
-0.1
+0.1
+0.8
-0.7
+0.1
carbon source
Azelaic (C)
+0.2
+0.1
+0.6
-0.8
+0.2
carbon source
Heptanoic (C)
+0.1
+0.2
+0.9
-0.1
-0.6
carbon source
Octanoic (C)
-0.0
+0.1
+1.1
-0.1
-0.6
stress
R2A with Lomefloxacin 0.001 mM
+0.3
+0.0
-0.9
+0.5
+0.7
carbon source
Suberic (C)
+0.2
+0.0
+0.9
-0.4
-0.0
nitrogen source
L-Leucine (N)
+0.1
+0.1
+0.9
-0.6
+0.3
stress
R2A with Paraquat dichloride 0.064 mg/ml
+0.2
-0.0
-0.5
+1.7
-0.5
stress
R2A with Zinc 0.1 mM
-0.1
+0.0
+0.4
+1.3
-0.4
stress
R2A with A22 0.01 mg/ml
+0.0
+0.0
+0.8
+0.6
-0.1
carbon source
L-Glutamine (C)
+0.1
+0.0
+0.4
+1.0
-0.1
carbon source
L-Histidine (C)
-0.0
-0.0
+0.9
+0.7
-0.0
stress
R2A with Vancomycin 0.5 mg/ml
+0.2
+0.1
+0.9
+0.8
-0.4
stress
R2A with D-Cycloserine 0.5 mg/ml
-0.3
-0.0
+0.9
+0.9
+0.2
carbon source
Ethanol (C)
+0.0
+0.1
+0.6
+0.9
+0.1
stress
R2A with D-Cycloserine 0.01 mg/ml
+0.4
+0.1
+0.4
+0.7
+0.2
nitrogen source
L-Leucine (N)
+0.2
+0.1
+0.9
+0.4
+0.2
carbon source
Pimelic (C)
+0.1
+0.1
+0.9
+0.3
+0.4
carbon source
Valeric (C)
-0.0
+0.0
+0.5
+1.2
+0.2
stress
R2A with Cobalt chloride 0.3 mM
+0.3
+0.1
-0.3
+1.1
+0.7
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RR42_RS14880
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