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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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5
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS14860 and RR42_RS14865 are separated by 209 nucleotides
RR42_RS14865 and RR42_RS14870 are separated by 25 nucleotides
RR42_RS14870 and RR42_RS14875 are separated by 183 nucleotides
RR42_RS14875 and RR42_RS14880 are separated by 3494 nucleotides
RR42_RS14860: RR42_RS14860 - hypothetical protein, at 3,203,676 to 3,203,870
_RS14860
RR42_RS14865: RR42_RS14865 - hypothetical protein, at 3,204,080 to 3,204,562
_RS14865
RR42_RS14870: RR42_RS14870 - hypothetical protein, at 3,204,588 to 3,205,784
_RS14870
RR42_RS14875: RR42_RS14875 - hypothetical protein, at 3,205,968 to 3,215,510
_RS14875
RR42_RS14880: RR42_RS14880 - hypothetical protein, at 3,219,005 to 3,219,994
_RS14880
Group
Condition
RR42
_RS14860
RR42
_RS14865
RR42
_RS14870
RR42
_RS14875
RR42
_RS14880
carbon source
L-Threonine (C)
-1.8
N.D.
+0.3
+0.0
-0.8
stress
R2A with Zinc 0.1 mM
-2.3
N.D.
-0.1
+0.0
+0.4
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
-1.4
N.D.
+0.2
+0.1
-0.4
stress
R2A with Lomefloxacin 0.001 mM
-0.8
N.D.
+0.3
+0.0
-0.9
stress
R2A with Cobalt chloride 0.3 mM
-1.3
N.D.
+0.3
+0.1
-0.3
carbon source
pyruvate (C)
-1.0
N.D.
-0.2
+0.0
+0.2
lb
LB
-1.4
N.D.
+0.2
-0.1
+0.3
carbon source
Carbon source Phenylacetic 2.5 mM
+0.3
N.D.
+0.1
+0.0
-1.0
stress
R2A with D-Cycloserine 0.01 mg/ml
-1.1
N.D.
+0.4
+0.1
+0.4
stress
R2A with Chlorite 4 mM
-0.8
N.D.
+0.1
+0.1
+0.3
carbon source
propionate (C)
+0.7
N.D.
+0.0
+0.0
-0.8
stress
R2A with A22 0.01 mg/ml
-0.8
N.D.
+0.0
+0.0
+0.8
stress
R2A with D-Cycloserine 0.5 mg/ml
-0.4
N.D.
-0.3
-0.0
+0.9
stress
R2A with Nickel (II) chloride 0.35 mM
+0.9
N.D.
-0.3
-0.0
-0.4
stress
R2A with Sisomicin 0.035 mg/ml
-0.6
N.D.
+0.1
+0.1
+0.7
stress
R2A with Cobalt chloride 0.5 mM
+1.0
N.D.
-0.2
+0.0
-0.4
stress
R2A with Vancomycin 0.5 mg/ml
-0.4
N.D.
+0.2
+0.1
+0.9
nitrogen source
L-Glutamine (N)
+0.7
N.D.
-0.1
-0.1
+0.5
stress
R2A with Cisplatin 0.001 mg/ml
+1.2
N.D.
+0.1
+0.0
-0.2
carbon source
Octanoic (C)
+0.2
N.D.
-0.0
+0.1
+1.1
carbon source
propionate (C)
+0.8
N.D.
-0.0
+0.2
+0.4
nitrogen source
D-Alanine (N)
+0.8
N.D.
-0.0
+0.0
+0.6
carbon source
L-Malic (C)
+0.9
N.D.
+0.1
+0.0
+0.4
carbon source
Heptanoic (C)
+0.4
N.D.
+0.1
+0.2
+0.9
carbon source
Ethanol (C)
+0.6
N.D.
+0.1
+0.1
+0.8
carbon source
L-Alanine (C)
+0.9
N.D.
-0.0
+0.1
+0.5
carbon source
Protocatechuic Acid (C)
+1.2
N.D.
+0.2
+0.2
-0.1
stress
R2A with Nickel (II) chloride 0.5 mM
+0.8
N.D.
-0.1
+0.1
+0.8
carbon source
Hexanoic (C)
+1.3
N.D.
+0.0
+0.1
+0.6
nitrogen source
L-Leucine (N)
+0.8
N.D.
+0.2
+0.1
+0.9
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